WormA
|
F. nyanzae
|
18S
|
54 °C
|
1870
|
GCGAATGGCTCATTAAATCAG
|
[104]
|
WormB
|
CTTGTTACGACTTTTACTTCC
|
[104]
|
18S_Dig_F
|
F. nyanzae
|
18S
|
50 °C
|
1161
|
CAGCTATGGTTCCTTAGATCRTA
|
[5]
|
1270R
|
CCGTCAATTCCTTTAAGT
|
[105]
|
ITS5
|
F. nyanzae
|
ITS1-5.8S-ITS2
|
50 °C
|
1065
|
GGAAGTAAAAGTCGTAACAAG
|
[106]
|
ITS4
|
TCCTCCGCTTATTGATATGC
|
[106]
|
ITS2_Dig_F
|
F. nyanzae
|
ITS2-28S
|
50 °C
|
647
|
CAAHAAGTCGTGGMTTGG
|
Hammoud C, Mulero S, Van Bocxlaer B, Boissier J, Verschuren D, Albrecht C, Huyse T: Simultaneous genotyping of snails and infecting trematode parasites using high-throughput amplicon sequencing, forthcoming
|
ITS2_Dig_R
|
AACAACCCGACTCCAAGG
|
Hammoud C, Mulero S, Van Bocxlaer B, Boissier J, Verschuren D, Albrecht C, Huyse T: Simultaneous genotyping of snails and infecting trematode parasites using high-throughput amplicon sequencing, forthcoming
|
COI1_Dig_F
|
F. nyanzae and Stomach flukes
|
COI
|
53 °C
|
943
|
CNATGATNTTNTTTTTTTTRATGCC
|
Hammoud C, Mulero S, Van Bocxlaer B, Boissier J, Verschuren D, Albrecht C, Huyse T: Simultaneous genotyping of snails and infecting trematode parasites using high-throughput amplicon sequencing, forthcoming
|
Nasmit R
|
ACATAATGAAARTCAGCNAYMACRA
|
Hammoud C, Mulero S, Van Bocxlaer B, Boissier J, Verschuren D, Albrecht C, Huyse T: Simultaneous genotyping of snails and infecting trematode parasites using high-throughput amplicon sequencing, forthcoming
|
COI1_Dig_F
|
Museum fasciolids
|
COI
|
53 °C
|
148
|
CNATGATNTTNTTTTTTTTRATGCC
|
Hammoud C, Mulero S, Van Bocxlaer B, Boissier J, Verschuren D, Albrecht C, Huyse T: Simultaneous genotyping of snails and infecting trematode parasites using high-throughput amplicon sequencing, forthcoming
|
COI_FAS_R
|
GACAAACAAACACAAGCAGG
|
This study
|
Fasc-ITS1 F
|
Fasciola sp. from infected snails
|
ITS1-5.8S-ITS2
|
55 °C
|
716
|
TCTACTCTTACACAAGCGATACAC
|
[7]
|
Fasc-ITS1 R
|
GGCTTTCTGCCAAGACAAG
|
[7]
|
COI1_Dig_F
|
Fasciola and Schistosoma sp. from infected snails
|
COI
|
50 °C
|
451
|
CNATGATNTTNTTTTTTTTRATGCC
|
Hammoud C, Mulero S, Van Bocxlaer B, Boissier J, Verschuren D, Albrecht C, Huyse T: Simultaneous genotyping of snails and infecting trematode parasites using high-throughput amplicon sequencing, forthcoming
|
COI1_Dig_R
|
GMASWACCAAAWTTHCGATCAAA
|
Hammoud C, Mulero S, Van Bocxlaer B, Boissier J, Verschuren D, Albrecht C, Huyse T: Simultaneous genotyping of snails and infecting trematode parasites using high-throughput amplicon sequencing, forthcoming
|
ITS2_Schisto_F
|
Schistosoma sp. from infected snails
|
ITS1-5.8S-ITS2
|
62 °C
|
369
|
GGAAACCAATGTATGGGATTATTG
|
[42]
|
ITS2_Schisto_R
|
ATTAAGCCACGACTCGAGCA
|
[42]
|
COI1_snail_F
|
Snails
|
COI
|
50 °C
|
536
|
TAATTWATTGTTACDGCWCATGC
|
Hammoud C, Mulero S, Van Bocxlaer B, Boissier J, Verschuren D, Albrecht C, Huyse T: Simultaneous genotyping of snails and infecting trematode parasites using high-throughput amplicon sequencing, forthcoming
|
COI1_snail_R
|
CWCCTCCTGCWGGATCAAA
|
Hammoud C, Mulero S, Van Bocxlaer B, Boissier J, Verschuren D, Albrecht C, Huyse T: Simultaneous genotyping of snails and infecting trematode parasites using high-throughput amplicon sequencing, forthcoming
|