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Table 1 Top 25 Serendipita indica (Si) differentially expressed genes (DEGs) during colonization (4 DPI)

From: A novel plant-fungal association reveals fundamental sRNA and gene expression reprogramming at the onset of symbiosis

Gene

Description

log2FC

1937_g (PIIN_04746)

Related to mismatch base pair and cruciform DNA recognition protein HMP1

− 5.84

465_g (PIIN_02587)

Related to phenylalanine ammonia-lyase

− 5.1

281_g (PIIN_04449)

Probable succinate-fumarate transporter

− 4.7

1121_g (PIIN_02682)

Related to ADY2-protein essential for the acetate permease activity

− 4.68

7809_g (PIIN_07312)

Related to RTM1 protein

− 4.52

2544_g (PIIN_02778)

Probable ADH1-alcohol dehydrogenase I

− 4.42

4482_g (PIIN_08427)

Related to mixed-linked glucanase precursor MLG1

− 4.23

4969_g (PIIN_02119)

Related to meiotic nuclear division protein 1 homolog

− 3.54

1859_g (PIIN_00204)

Probable thioredoxin

− 3.45

5786_g (PIIN_00305)

Probable DHA14-like major facilitator; ABC transporter

− 3.41

4465_g (PIIN_06089)

Putative mitochondrial carnitine O-acetyltransferase

− 3.36

1392_g (PIIN_11719)

Putative alkaline ceramidase 3

− 3.22

8569_g (PIIN_01532)

Related to Ca2+-transport (H+/Ca2+ exchange) protein

− 3.21

2933_g (PIIN_07440)

Related to monocarboxylate transporter 2

− 3.21

758_g (PIIN_02772)

Probable TOM40-mitochondrial import receptor MOM38

− 3.19

2855_g (PIIN_07067)

Related to l-asparaginase

− 3.18

5713_g (PIIN_07616)

Related to MFS transporter

− 3.17

3225_g (PIIN_08230)

Related to RSB1-integral membrane transporter

− 3.11

8602_g (PIIN_08742)

Putative maintenance of mitochondrial morphology protein 1

− 3.09

917_g (PIIN_03155)

Related to YTP1

− 3.05

6928_g (PIIN_00312)

Related to nitrogen metabolic regulation protein

− 2.96

6930_g (PIIN_00314)

Probable malate synthase

− 2.94

4348_g (PIIN_03103)

Putative ubiquitin-conjugating enzyme D4

− 2.9

6400_g (PIIN_07801)

Probable acyl-CoA dehydrogenase short-branched chain precursor

− 2.9

5097_g (PIIN_04235)

Related to acyl-CoA dehydrogenase

− 2.88

5186_g (PIIN_09750)

Probable pectate lyase

11.93

8239_g (PIIN_02110)

Related to family 61 glucanase

11.29

3289_g (PIIN_05863)

Endo-1,4-beta-xylanase

10.75

7464_g (PIIN_04708)

Alpha-L-arabinofuranosidase

10.14

5322_g (PIIN_05889)

Endo-1,4-beta-xylanase

10.14

1898_g (PIIN_08141)

Glutathione S-transferase

9.1

5131_g (PIIN_02752)

Cellulose 1,4-beta-cellobiosidase

8.93

3537_g (PIIN_10118)

Carboxylic ester hydrolase

8.83

6726_g (PIIN_08399)

Probable alpha-galactosidase B

8.29

4844_g (PIIN_06890)

Endo-1,4-beta-xylanase A

7.9

8585_g (PIIN_01553)

Probable beta-glucosidase

7.88

3597_g (PIIN_06117)

Related to endoglucanase B

7.78

5420_g (PIIN_07414)

Related to NACHT/WD40 domain-containing protein

7.64

1875_g (PIIN_06862)

Rhamnogalacturonan acetylesterase

7.62

6520_g (PIIN_06360)

Endo-1,4-beta-xylanase C

7.53

3290_g (PIIN_05862)

Probable endo-1,4-beta-xylanase A

7.42

3615_g (PIIN_11270)

Probable feruloyl esterase C

7.37

5971_g (PIIN_04536)

Probable gEgh 16 protein

7.3

8031_g (PIIN_01484)

Related to CEL1 protein precursor

7.2

6665_g (PIIN_03039)

Probable beta-glucoside glucohydrolase

7.15

720_g (PIIN_06594)

Cellulose 1,4-beta-cellobiosidase

7.08

3514_g (PIIN_09664)

Glucose oxidase

7.01

290_g (PIIN_04439)

Related to peroxisomal short-chain alcohol dehydrogenase

6.97

6967_g (PIIN_00353)

Exocellobiohydrolase 3

6.7

1893_g (PIIN_08147)

Probable glutathione S-transferase

6.57

  1. DEGs are calculated as: colonized root vs. Si axenic culture exhibiting significant (padj. < 0.05) down- or up-regulation, log2 FC (fold change) during colonization