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Fig. 2 | BMC Biology

Fig. 2

From: Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species

Fig. 2

Whole-genome landscape of chromatin accessibility in A. niger. a Syntenic analysis between A. niger CBS513.88 (contig A1-A17 corresponding to An01-An19) and SH2 (contig S1-S11), and visualization of ATAC-seq peak signals in A. niger CBS513.88 (orange) and SH2 (blue). The outer signal represents the A. niger CBS513.88 naked genomic DNA which was used as the integration control of Tn5 transposase. b A Venn diagram showing the overlap of accessible regions between A. niger CBS513.88 and SH2. c Density plots of mapped reads (upper) and heatmap of peak length (bottom) for the 2-kb region flanking the peak center. d Distribution of accessible regions in the promoter, intergenic region, exon, intron, and TTS in A. niger CBS513.88 and SH2. e Syntenic analysis of ATAC-seq peaks between A. niger CBS513.88 (contig A1-A17) and A. oryzae niaD30 (contig R1-R8). f Functional clustering of overlapping ATAC-seq peaks of A. niger CBS513.88 and A. oryzae niaD300

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BMC Biology

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