| Early wave sRNAs | Late wave sRNAs | No differential expression | |
---|---|---|---|---|
Up-regulated in germinated spores | Up-regulated during early infection | Up-regulated during late infection | Â | |
# of sRNAs | 2663 | 530 | 4005 | 639 |
Centromeric sRNAs | 1.1% | 1.9% | 23.9% | 3.3% |
On chromosomes A | 50.4% | 50.4% | 49.6% | 49.3% |
On chromosomes B | 49.6% | 49.6% | 50.4% | 50.8% |
sRNAs with homologous counterpart | 68.1% | 67.5% | 54.8% | 44.6% |
Homologous counterpart is on alternate haplotype chromosome | 82.6% | 85% | 18.2% | 36.8% |
Mapping to repeats | 24.9% | 30.9% | 88.3% | 62.1% |
Mapping to genes | 77.1% | 68.3% | 16% | 48.4% |
Overlap with methylated CG sites (late infection) | 10.9% | 22.8% | 94% | 49.8% |
Overlap with methylated CG sites (germinated spores) | 11.6% | 22.5% | 95.5% | 51.6% |
Classification of repeats with mapped sRNAs | ||||
 Class I (retrotransposons) | 58.7% | 58.6% | 56.4% | 61.8% |
  Gypsy LTR | 29.6% | 16.2% | 29.8% | 28.7% |
  Copia LTR | 9.9% | 19.9% | 14.2% | 13.3% |
 Class II (DNA transposons) | 38.4% | 37.2% | 42.2% | 37.2% |
  Tc1-Mariner | 5.5% | 5.2% | 2.9% | 4.1% |
  MuDR | 5.6% | 3.1% | 6.9% | 7.8% |