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Table 6 Pgt genes that are associated with sRNAs up-regulated in germinated spores and their functional GO term enrichment. We assessed GO term enrichments of the annotated molecular function of Pgt genes that are associated with sRNAs compared to all other Pgt genes (FDR < 0.00001). The top ten categories with the lowest FDR are shown

From: The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

Enriched GO term category

False discovery rate (FDR)

# of genes

Genes that are associated with sRNAs up-regulated in germinated spores

 ATP binding

1.7 × 10−35

233

 Helicase activity

1.5 × 10−13

47

 Motor activity

4.5 × 10−11

25

 RNA binding

6.5 × 10−10

110

 Shikimate 3-dehydrogenase (NADP+) activity

1.7 × 10−9

8

 Histone methyltransferase activity (H3-K4 specific)

4.2 × 10−9

9

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BMC Biology

ISSN: 1741-7007

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