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Table 8 TEs that have a sRNA mapping to them are more likely to be methylated

From: The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

 

Young TEs in centromeres

Old TEs in centromeres

Young TEs not in centromeres

Old TEs not in centromeres

sRNA+

sRNA−

sRNA+

sRNA−

sRNA+

sRNA−

sRNA+

sRNA−

Small RNAs up-regulated in germinated spores

 TEs that are methylated (germinated spores)

82.5%

55%

54.5%

34.1%

75.1%

47.6%

26.3%

12.3%

 TEs that are methylated (late infection)

76.3%

50.9%

54.5%

31.3%

73.2%

45.2%

25.9%

11.2%

Small RNAs up-regulated in late infection

 TEs that are methylated (germinated spores)

80.3%

44.6%

61.4%

32.1%

82.9%

39.9%

66.2%

11.3%

 TEs that are methylated (late infection)

74.6%

41.1%

53.4%

29.7%

80.4%

37.6%

63.2%

10.3%

Small RNAs with no differential expression

 TEs that are methylated (germinated spores)

83.5%

54.7%

64%

34%

79.7%

47.2%

62.5%

12.2%

 TEs that are methylated (late infection)

77.4%

50.6%

56%

31.3%

77.4%

44.8%

61.7%

11.1%

Small RNAs with 22 nts and 5adenine

 TEs that are methylated (germinated spores)

82.1%

50.6%

65.7%

33.3%

86.3%

44.5%

57.4%

12.1%

 TEs that are methylated (late infection)

75.6%

46.9%

55.2%

30.7%

84.8%

42.1%

55%

11%

Average

79%

49.3%

58.1%

32.1%

80%

43.6%

52.3%

11.4%