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Fig. 1 | BMC Biology

Fig. 1

From: Selection shapes the landscape of functional variation in wild house mice

Fig. 1

Functional annotation of wild mouse genetic diversity. a Venn diagram of shared and private autosomal SNPs (%) in each house mouse subspecies and species. Percentages are calculated from all ascertained variants in these samples. b Total numbers of autosomal variants (genome), intergenic, intron, missense, and synonymous SNPs in each M. musculus population. Total number of missense and synonymous variants identified in each population are annotated on their respective bar plots (kb - kilobase). c Principal component analysis for all 154 wild mouse genomes. The inset zooms into the two M. m. castaneus populations and reveals greater diversity among samples from the Indian population than the population from Taiwan. d Maximum likelihood phylogenetic tree from all 154 wild mouse genomes. For ease of visualization, samples from most populations are collapsed, with triangle width scaled by the number of samples in that population. One node with < 100% bootstrap support is labeled. All other nodes are supported by 100% of bootstrap replicates. The population labels are America (AMR), France (FRA), Germany (GER), Heligoland (HEL), Iran (IRA), India (IND), Taiwan (TAI), Afghanistan (AFG), Kazakhstan (KAZ), and Czech Republic (CRP), M. spretus (SPR)

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