Fig. 3

Differences at CUG, CUU and UCC codons between alleles. A Schematic view of serine and leucine codon boxes and available tRNAs. B Genes of the C. albicans SC5314 genome annotation with haplotype assignment (tagged A/B) and identical length were compared with respect to CUG, CUU, and UCC codons. Each of the three codons was analysed separately. For simplicity, alleles were only distinguished into those with identical codons at all occurrences of the respective codon, and those where the alleles differ at least one of the codons (if there are multiple in the genes). C Analysis of the differences at all codon sites where the alleles differ. The differences at codons are split for the three codon positions and the rest combining multiple differences. The corresponding amino acids at the other allele are given in smaller letters for orientation. The ratio for the differences identified at the third position of the CUU codon (CUA/CUC versus CUG) is given in the plot, and the exact distribution of the other codon sites are available in Additional file 3 Table S3