Table 1 Number of obtained PSMs and proteins and CUG positions covered. If not indicated otherwise, numbers include positions both with and without direct b-/y-type support
From: Proteogenomics analysis of CUG codon translation in the human pathogen Candida albicans
Yeast | Strain | Growth form | Protein database | # PSM with CUG | # PSMs with supported CUG | # CUG positions covered | # supported CUG positions covered | % supported positions | # identified proteins with CUG | % identified proteins with CUG | CUG position recovery [%] |
|---|---|---|---|---|---|---|---|---|---|---|---|
Candida albicans | DSM70014 | Yeast | SC5314 | 3510 | 2206 | 345 | 243 | 70.43 | 1406 | 17.46 | 9.85 |
Candida albicans | SC5314 | Yeast | SC5314 | 1761 | 1024 | 658 | 413 | 62.77 | 2151 | 26.71 | 10.69 |
Candida albicans | SC5314 | Hyphal | SC5314 | 6368 | 3549 | 1148 | 719 | 62.63 | 2687 | 33.37 | 14.1 |
Candida albicans | EU0006 | Yeast | SC5314 | 3801 | 2078 | 762 | 469 | 61.55 | 2306 | 28.64 | 11.3 |
Candida albicans | EU0006 | Hyphal | SC5314 | 4021 | 2365 | 934 | 608 | 65.1 | 2503 | 31.09 | 12.38 |
Candida albicans | EU0009 | Yeast | SC5314 | 4838 | 2754 | 931 | 599 | 64.34 | 2477 | 30.76 | 12.59 |
Candida albicans | EU0009 | Hyphal | SC5314 | 4405 | 2467 | 925 | 610 | 65.95 | 2515 | 31.23 | 12.04 |
Candida albicans | EU0075 | Yeast | SC5314 | 3284 | 1611 | 756 | 413 | 54.63 | 2240 | 27.82 | 11.47 |
Candida albicans | EU0075 | Hyphal | SC5314 | 3501 | 1762 | 876 | 499 | 56.96 | 2446 | 30.38 | 11.7 |
Candida albicans | DSM70014 | Yeast | WO-1 | 3195 | 2048 | 329 | 223 | 67.78 | 1197 | 30.27 | 11.63 |
Candida albicans | SC5314 | Yeast | WO-1 | 1501 | 855 | 592 | 371 | 62.67 | 1756 | 44.41 | 12.47 |
Candida albicans | SC5314 | Hyphal | WO-1 | 5414 | 3015 | 1003 | 644 | 64.21 | 2136 | 54.02 | 16.25 |
Candida albicans | EU0006 | Yeast | WO-1 | 3436 | 1862 | 719 | 435 | 60.5 | 1861 | 47.07 | 13.89 |
Candida albicans | EU0006 | Hyphal | WO-1 | 3619 | 2093 | 888 | 572 | 64.41 | 1999 | 50.56 | 15.59 |
Candida albicans | EU0009 | Yeast | WO-1 | 4412 | 2423 | 882 | 557 | 63.15 | 1981 | 50.1 | 15.67 |
Candida albicans | EU0009 | Hyphal | WO-1 | 4066 | 2217 | 872 | 570 | 65.37 | 2005 | 50.71 | 15.06 |
Candida albicans | EU0075 | Yeast | WO-1 | 2957 | 1424 | 709 | 381 | 53.74 | 1795 | 45.4 | 14.24 |
Candida albicans | EU0075 | Hyphal | WO-1 | 3166 | 1568 | 834 | 471 | 56.47 | 1959 | 49.54 | 14.79 |
Candida dubliniensis | CBS 7987 | Yeast | Â | 966 | 466 | 232 | 121 | 52.16 | 1003 | 25.61 | 10.02 |
Candida tropicalis | DSM 24507 | Yeast | Â | 3032 | 1827 | 378 | 262 | 69.31 | 1247 | 31.45 | 12.64 |
Millerozyma acaciae | CBS 5656 | Yeast | Â | 4962 | 2895 | 1631 | 1111 | 68.12 | 2418 | 67.62 | 17.85 |
Babjeviella inositovora | NRRL Y-12698 | Yeast | Â | 4937 | 2348 | 1211 | 930 | 76.8 | 2122 | 47.47 | 17.34 |
Clavispora lusitaniae | ATCC 42720 | Yeast | Â | 5803 | 2715 | 2360 | 1835 | 77.75 | 2843 | 56.95 | 15.87 |