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Table 2 Characteristics of the orthologous satDNA families analyzed in O. decorus (14) and L. migratoria (20). Each row includes one Ode and one Lmi satDNA families showing homology between them. Note that some Ode families showed homology with two or three Lmi ones. OSF orthologous superfamily, sf number of subfamilies, FISH FISH pattern (B = banded, NS = no signal), abun abundance (% of the genome), RPS relative peak size, DP DIVPEAK, MAL maximum array length observed in MinIon reads of L. migratoria, CEI concerted evolution index (L = L. migratoria, O = O. decorus), Intid = Interspecific sequence identity (%), Intdiv = Interspecific divergence, CTR consensus turnover rate, ILibS incomplete library sorting. Negative CEI values and Int_id > 95% are remarked in bold-type letter. See Table S4 to complete data with repeat unit length, A + T content, divergence (%), peak size, kurtosis of the repeat landscape, tandem structure index, and Gibbs free energy of the secondary structure

From: Satellitome comparison of two oedipodine grasshoppers highlights the contingent nature of satellite DNA evolution

 

O. decorus

Locusta migratoria

Interspecific comparisons

OSF

Name

sf

FISH

abun

RPS

DP

Name

sf

FISH

abun

RPS

DP

MAL

CEI_O

CEI_L

Int_id

Int_div

CTR

ILibS

1

OdeSat01-287

1

B

6.2E-03

87%

1

LmiSat09-181

5

B

3.0E−04

65%

0

4417

88.4

85.6

68.9

90.8

1.990

0.30

2

OdeSat02-204

4

B

3.3E−03

51%

2

LmiSat03-195

6

B

3.0E−03

63%

3

13,447

124.5

125.1

60.6

130.4

2.858

0

3

OdeSat17-176

1

NS

2.0E−04

29%

27

LmiSat02-176

1

B

3.6E−03

68%

4

20,180

−24.6

−5.1

99.4

0.6

0.013

1.00

4

OdeSat21-228

3

NS

1.5E−04

58%

3

LmiSat51-241

1

B

2.9E−05

61%

3

1708

67.0

66.5

71.8

72.8

1.596

0.44

4

OdeSat32-238

2

B

8.5E−05

36%

2

LmiSat26-240

2

B

1.0E−04

60%

3

1455

40.5

47.8

77.7

53.1

1.164

0.59

4

      

LmiSat37-238

1

B

4.6E−05

59%

3

2454

54.4

59.5

75.6

67

1.469

0.49

5

OdeSat22-267

3

B

1.4E−04

59%

1

LmiSat12-273

3

B

1.3E−04

74%

1

2948

90.6

94.8

75

98.1

2.150

0.25

5

      

LmiSat16-278

1

B

1.4E−04

87%

2

1965

89.5

94.6

72.6

97

2.126

0.26

6

OdeSat26-180

1

B

1.3E−04

88%

2

LmiSat41-180

1

B

5.1E−05

94%

3

515

29.2

28.2

74.4

31.7

0.695

0.76

7

OdeSat28-276

1

B

1.2E−04

56%

5

LmiSat24-266

1

NS

5.9E−05

90%

0

1378

49.4

53.4

67.9

55.8

1.223

0.57

7

      

LmiSat45-274

1

B

2.5E−05

54%

2

945

19.0

16.8

79.7

25.4

0.557

0.81

7

      

LmiSat54-272

1

B

1.6E−05

65%

0

2073

58.7

60.2

66.3

65.1

1.427

0.50

7

OdeSat58-265

2

NS

9.5E−06

88%

0

LmiSat28-263

2

B

6.0E−05

97%

0

2821

30.1

32.4

77.5

33.9

0.743

0.74

7

      

LmiSat43-231

1

B

3.9E−05

100%

0

 

39.3

42.7

69.3

43.1

0.945

0.67

8

OdeSat39-185

2

NS

6.8E−05

67%

4

LmiSat06-185

4

B

4.9E−04

66%

3

19,168

14.9

16.1

84.3

21

0.460

0.84

9

OdeSat41-75

1

NS

6.1E−05

29%

18

LmiSat27-57

1

NS

5.4E−05

32%

0

712

−2.4

7.1

92.7

16.2

0.355

0.88

10

OdeSat56-249

1

NS

2.0E−05

93%

0

LmiSat32-261

1

B

3.9E−05

60%

0

1489

31.5

26.4

77.2

32.9

0.721

0.75

11

OdeSat57-75

1

NS

1.4E−05

40%

4

LmiSat17-75

1

B

1.2E−04

48%

2

3194

−1.3

2.7

92

8.5

0.186

0.93

12

OdeSat59-185

1

NS

5.8E−06

36%

3

LmiSat01-185

5

B

9.8E−03

46%

3

17,619

−0.9

7.2

98.9

11.8

0.259

0.91

12

      

LmiSat13-259

5

B

1.5E−04

76%

4

1379

44.1

52.3

63.3

56.8

1.245

0.56

               

Mean

77.3

50.6

1.109

61%

               

SD

11.1

34.7

0.76

27%

               

CV

14%

69%

69%

44%