Fig. 6

Molecular phylogeny and global alignment of pTi. The maximum likelihood phylogeny was inferred based on the concatenated alignment of 21 core genes and 8534 aligned amino acid sites (Supplementary Figure S6A). The species phylogeny on the right is based on Fig. 1. The pTi sequences derived from this study are highlighted in bold. For those with relevant information available, the genomospecies assignments are indicated in square brackets and the opine types are indicated in parentheses. For the alignment, all plasmids are visualized in linear form starting from the replication genes. The key gene clusters are color-coded according to functions, and the predicted T-DNA regions are indicated by the black horizontal bracket above each plasmid. Syntenic regions are indicated by gray blocks