Skip to main content

Table 1 List of the genome sequences used in this study. These include 14 new genomes derived from this study and 21 additional representatives from GenBank. Two Agrobacterium larrymoorei strains are included as the outgroup. Species name abbreviations: At, Agrobacterium tumefaciens; Al, Agrobacterium larrymoorei

From: Modular evolution of secretion systems and virulence plasmids in a bacterial species complex

Species Strain Accession Assembly Coding sequences Pseudo-genes Geographic origin Isolation source
At G1 1D1108 GCF_003666425 Complete 5312 167 MD, USA Euonymus sp.
At G1 5A GCF_000236125 50 contigs 5343 169 MT, USA Soil
At G1 Ach5 GCF_000971565 Complete 5184 145 CA, USA Achillea ptarmica
At G1 N2/73 GCF_001692195 29 scaffolds 5345 157 OR, USA Cranberry
At G1 S56 GCF_900014385 6 scaffolds 5414 218 ? Plant
At G2 CFBP5494 GCF_900013495 5 scaffolds 5469 233 France Human
At G2 CFBP5496 GCF_005144405 9 contigs 5137 223 France Human
At G2 CFBP5875 GCF_005221365 Complete 4570 146 Belgium Ditch water
At G3 CFBP6623 GCF_005221385 Complete 5081 180 France Antiseptic flask
At G3 CFBP6624 GCF_005221425 Complete 5157 148 France Human
At G4 183 GCF_004023565 Complete 5051 199 Tunisia Prunus dulcis
At G4 186 GCF_002591665 Complete 5298 207 CA, USA Juglans regia
At G4 12D1 GCF_003667905 Complete 5005 167 ? ?
At G4 1D1460 GCF_003666445 Complete 5290 269 CA, USA Rubus sp.
At G5 CFBP6625 GCF_005221465 Complete 5446 198 France Food
At G5 CFBP6626 GCF_005221445 Complete 5080 199 France Human
At G5 F2 GCF_000219665 8 contigs 5085 135 Harbin, China Soil
At G6 CFBP5499 GCF_005221325 Complete 5654 240 South Africa Dahlia sp.
At G6 CFBP5877 GCF_005221345 Complete 5463 236 Israel Dahlia sp.
At G7 1D1609 GCF_002943835 Complete 5539 254 CA, USA Medicago sativa
At G7 CFBP4996 GCF_005144435 10 contigs 5741 213 UK Flacourtia ramontchi
At G7 CFBP7129 GCF_005221405 Complete 5927 285 Tunisia Pyrus communis
At G8 12D13 GCF_003667945 Complete 5083 178 ? ?
At G8 1D132 GCF_003667725 Complete 5176 169 CA, USA Cerasus pseudocerasus
At G8 ATCC31749 GCF_002916755 4 contigs 4560 811 China Plant
At G8 C58 GCF_000092025 Complete 5355 29 NY, USA Cerasus pseudocerasus
At G9 CFBP5506 GCF_005144495 15 contigs 4236 157 Australia Soil
At G9 CFBP5507 GCF_005144505 16 contigs 5299 253 Australia Soil
At G9 GBBC3283 GCF_007002765 48 contigs 4946 203 Belgium Solanum lycopersicum
At G13 CFBP6927 GCF_900012615 9 scaffolds 4722 94 France Rhizospheric soil from Prunus persicae
At G13 S2 GCF_000723345 60 contigs 5574 167 ? ?
At G21 MAFF210266 GCF_007002865 26 contigs 5199 162 Japan Cucumis melo
At G22 KCJK1736 GCF_001641425 41 contigs 4933 162 FL, USA Bos taurus feces
Al CFBP5473 GCF_005145045 Complete 4777 142 FL, USA Ficus benjamina
Al CFBP5477 GCF_005144425 24 contigs 4657 95 Italy ?