Table 1 List of the genome sequences used in this study. These include 14 new genomes derived from this study and 21 additional representatives from GenBank. Two Agrobacterium larrymoorei strains are included as the outgroup. Species name abbreviations: At, Agrobacterium tumefaciens; Al, Agrobacterium larrymoorei
From: Modular evolution of secretion systems and virulence plasmids in a bacterial species complex
Species | Strain | Accession | Assembly | Coding sequences | Pseudo-genes | Geographic origin | Isolation source |
|---|---|---|---|---|---|---|---|
At G1 | 1D1108 | GCF_003666425 | Complete | 5312 | 167 | MD, USA | Euonymus sp. |
At G1 | 5A | GCF_000236125 | 50 contigs | 5343 | 169 | MT, USA | Soil |
At G1 | Ach5 | GCF_000971565 | Complete | 5184 | 145 | CA, USA | Achillea ptarmica |
At G1 | N2/73 | GCF_001692195 | 29 scaffolds | 5345 | 157 | OR, USA | Cranberry |
At G1 | S56 | GCF_900014385 | 6 scaffolds | 5414 | 218 | ? | Plant |
At G2 | CFBP5494 | GCF_900013495 | 5 scaffolds | 5469 | 233 | France | Human |
At G2 | CFBP5496 | GCF_005144405 | 9 contigs | 5137 | 223 | France | Human |
At G2 | CFBP5875 | GCF_005221365 | Complete | 4570 | 146 | Belgium | Ditch water |
At G3 | CFBP6623 | GCF_005221385 | Complete | 5081 | 180 | France | Antiseptic flask |
At G3 | CFBP6624 | GCF_005221425 | Complete | 5157 | 148 | France | Human |
At G4 | 183 | GCF_004023565 | Complete | 5051 | 199 | Tunisia | Prunus dulcis |
At G4 | 186 | GCF_002591665 | Complete | 5298 | 207 | CA, USA | Juglans regia |
At G4 | 12D1 | GCF_003667905 | Complete | 5005 | 167 | ? | ? |
At G4 | 1D1460 | GCF_003666445 | Complete | 5290 | 269 | CA, USA | Rubus sp. |
At G5 | CFBP6625 | GCF_005221465 | Complete | 5446 | 198 | France | Food |
At G5 | CFBP6626 | GCF_005221445 | Complete | 5080 | 199 | France | Human |
At G5 | F2 | GCF_000219665 | 8 contigs | 5085 | 135 | Harbin, China | Soil |
At G6 | CFBP5499 | GCF_005221325 | Complete | 5654 | 240 | South Africa | Dahlia sp. |
At G6 | CFBP5877 | GCF_005221345 | Complete | 5463 | 236 | Israel | Dahlia sp. |
At G7 | 1D1609 | GCF_002943835 | Complete | 5539 | 254 | CA, USA | Medicago sativa |
At G7 | CFBP4996 | GCF_005144435 | 10 contigs | 5741 | 213 | UK | Flacourtia ramontchi |
At G7 | CFBP7129 | GCF_005221405 | Complete | 5927 | 285 | Tunisia | Pyrus communis |
At G8 | 12D13 | GCF_003667945 | Complete | 5083 | 178 | ? | ? |
At G8 | 1D132 | GCF_003667725 | Complete | 5176 | 169 | CA, USA | Cerasus pseudocerasus |
At G8 | ATCC31749 | GCF_002916755 | 4 contigs | 4560 | 811 | China | Plant |
At G8 | C58 | GCF_000092025 | Complete | 5355 | 29 | NY, USA | Cerasus pseudocerasus |
At G9 | CFBP5506 | GCF_005144495 | 15 contigs | 4236 | 157 | Australia | Soil |
At G9 | CFBP5507 | GCF_005144505 | 16 contigs | 5299 | 253 | Australia | Soil |
At G9 | GBBC3283 | GCF_007002765 | 48 contigs | 4946 | 203 | Belgium | Solanum lycopersicum |
At G13 | CFBP6927 | GCF_900012615 | 9 scaffolds | 4722 | 94 | France | Rhizospheric soil from Prunus persicae |
At G13 | S2 | GCF_000723345 | 60 contigs | 5574 | 167 | ? | ? |
At G21 | MAFF210266 | GCF_007002865 | 26 contigs | 5199 | 162 | Japan | Cucumis melo |
At G22 | KCJK1736 | GCF_001641425 | 41 contigs | 4933 | 162 | FL, USA | Bos taurus feces |
Al | CFBP5473 | GCF_005145045 | Complete | 4777 | 142 | FL, USA | Ficus benjamina |
Al | CFBP5477 | GCF_005144425 | 24 contigs | 4657 | 95 | Italy | ? |