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Fig. 2 | BMC Biology

Fig. 2

From: Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology

Fig. 2

Genotyping sensitivity and precision of A deletions and B insertions discovered from the Oxford Nanopore data. Sensitivity was defined as the fraction of SVs in the ground truth set (SVs called by Sniffles from Oxford Nanopore data) genotyped as the alternative allele (non-reference) from the Illumina data. Precision was defined as the fraction of SVs genotyped as the alternative allele from the Illumina data that were also observed in the truth set. Each line and color represents one of 17 samples. The different plots correspond to different SV lengths. The points correspond to different filtering thresholds on the minimum number of Illumina reads required to support a genotype call. The asterisks indicate a minimum number of supporting reads of 2; points to the left of these for a given line represent increasingly stringent filtering threshold values (i.e., a greater number of reads supporting a genotype call). Some of the threshold values for the minimum number of reads supporting a genotype call are shown for a single sample in the upper left plot of panel A

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