Fig. 3

Circos plot of the distribution of various features within 3-Mb bins along the reference assembly version 4 of Williams82. Results shown are based on the population-scale (102 samples) genotyping of SVs discovered using both Illumina and Oxford Nanopore data. A Gene density. B Density of SNVs called by Platypus. C Number of deletions (blue) and insertions (red) discovered within each bin. The bins with the 10% highest SV density (insertions and deletions considered together) are highlighted in gray. D Number of reference (blue) and polymorphic (red) LTR Copia and LTR Gypsy elements (summed together). E Number of reference (blue) and polymorphic (red) DNA transposable elements. The gray highlights in tracks D and E show the bins with the 10% highest polymorphic/reference ratios