Table 2 Comparison of the repeats among four crustaceans
Repeats | B. jamesi | A. vulgare | L. vannamei | E. sinensis |
|---|---|---|---|---|
Total length | 5.90 Gb | 1.73 Gb | 1.66 Gb | 1.56 Gb |
Repeats | 85.32% | 69.54% | 49.39% | 35.57% |
DNA | 35.99% | 7.08% | 9.33% | 2.30% |
DNA/En-Spm | 3.28% | 0.00% | 6.39% | 0.82% |
DNA/Maverick | 5.08% | 0.63% | 0.80% | 0.10% |
DNA/Merlin | 0.37% | 0.28% | 0.00% | 0.01% |
DNA/TcMar-Mariner | 0.87% | 0.21% | 0.06% | 0.00% |
DNA/TcMar-Tc1 | 6.05% | 1.23% | 0.03% | 0.02% |
DNA/hAT-Ac | 1.41% | 2.18% | 0.00% | 0.11% |
DNA/hAT-Charlie | 1.04% | 0.11% | 1.00% | 0.09% |
DNA/hAT-hATm | 5.77% | 0.81% | 0.00% | 0.00% |
DNA/hAT-Tip100 | 2.67% | 0.36% | 0.00% | 0.00% |
LINE | 19.36% | 20.24% | 2.82% | 9.72% |
LINE/CR1 | 9.13% | 14.46% | 0.25% | 4.06% |
LINE/Jockey | 1.06% | 0.63% | 0.06% | 0.05% |
LINE/L2 | 1.80% | 0.62% | 0.35% | 0.36% |
LINE/Penelope | 3.61% | 1.26% | 0.45% | 0.04% |
LINE/RTE-BovB | 0.62% | 3.00% | 0.77% | 0.91% |
SINE | 1.00% | 0.00% | 0.06% | 0.29% |
LTR | 5.95% | 5.89% | 0.62% | 1.79% |
LTR/ERV1 | 0.24% | 0.00% | 0.02% | 0.01% |
LTR/Pao | 2.48% | 2.32% | 0.00% | 0.19% |
LTR/Gypsy | 2.76% | 3.22% | 0.22% | 1.28% |
Unknown | 21.97% | 14.87% | 3.42% | 10.39% |
Satellite | 0.31% | 0.00% | 0.10% | 0.00% |
Simple repeat | 0.65% | 18.08% | 23.93% | 6.90% |
Low complexity | 0.01% | 3.57% | 9.49% | 2.04% |