Table 1 Genomic sequencing, assembly, and annotation statistic for four wild peach species
Species | P. mira | P. davidiana | P. kansuensis | P. ferganensis |
|---|---|---|---|---|
Estimated genome size (Mb) | 242.94 | 237.29 | 238.06 | 237.24 |
Sequencing depth (×) | 600.37 | 574.84 | 343.99 | 387.9 |
Total sequencing data (Gb) | 145.86 | 136.41 | 91.15 | 92.02 |
Assembled genome size (Mb) | 253.63 | 259.27 | 253.17 | 261.30 |
Contig N50 (bp) | 25,948,270 | 22,637,438 | 24,419,080 | 26,470,137 |
Contig N50 (number) | 4 | 4 | 5 | 4 |
Scaffold N50 (bp) | 27,933,902 | 28,549,251 | 28,885,292 | 28,247,033 |
Scaffold N50 (number) | 4 | 4 | 4 | 4 |
GC content (%) | 38.29 | 38.92 | 38.34 | 38.84 |
Percent of repeat sequence (%) | 48.38 | 52.27 | 49.33 | 49.49 |
Predicted gene number | 28,519 | 27,236 | 26,986 | 28,587 |
Annotated gene number | 27,613 | 26,545 | 26,374 | 27,803 |