Fig. 4
Induction of immune responsive genes are related with the upregulated transcribed enhancers. a Enrichment of the closest genes of upregulated enhancers (left panel) and of downregulated enhancers (right panel) with GO terms. b Frequency distribution of difference in gene expression, which were from the closest genes of upregulated (left panel) and of downregulated enhancers (right panel), post flg22 treatment compared with mock water treatment. c Representative example of immune genes interacted with upregulated enhancers in the loops. Pale blue bars indicate eRNA transcription regions. Plus and minus signs indicate Arabidopsis seedlings treated with flg22 and those that were mock-treated, respectively. The raw read counts of each gene are shown. Frw, forward strand; rev, reverse strand. d Integrated gene regulatory networks (iGRNs) among upregulated enhancersA, WRKY transcription factors and regulatory genes