Table 1 List of attributes and their definitions as currently available in Griottes
From: Griottes: a generalist tool for network generation from segmented tissue images
Node attribute | Definition |
|---|---|
x, y, z | Mask geometric center in x,y,z |
Area | Mask size |
θ (, ψ) | Orientation of the mask major axis (in 3D) |
Eccentricity | Mask eccentricity |
Fluorescence | Mean mask fluorescence (one value for each channel) |
Label | Unique number each cell |
Link attribute | Definition |
Contact size | Length of the cell-cell contact |
Distance | Distance between two cell centers |