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Table 1 List of attributes and their definitions as currently available in Griottes

From: Griottes: a generalist tool for network generation from segmented tissue images

Node attribute Definition
x, y, z Mask geometric center in x,y,z
Area Mask size
θ (, ψ) Orientation of the mask major axis (in 3D)
Eccentricity Mask eccentricity
Fluorescence Mean mask fluorescence (one value for each channel)
Label Unique number each cell
Link attribute Definition
Contact size Length of the cell-cell contact
Distance Distance between two cell centers