Table 2 Recombination statistics on four types of repeats among 33 mitogenomes
From: Rearrangement and domestication as drivers of Rosaceae mitogenome plasticity
Sample | Number (%a) of repeatsb with recombination activity | |||
|---|---|---|---|---|
Repeat length < 100 bp | 100 bp ≤ repeat length ≤ 500 bp | 500 bp < repeat length ≤ 1000 bp | Repeat length > 1000 bp | |
Fana-C | 2 (1.98) | 1 (9.09) | NA | NA |
Fana-R | 11 (9.91) | 6 (54.55) | NA | NA |
Fiin | 3 (2.68) | 1 (3.70) | 0 (0.00) | 1 (100.00) |
Fman | 3 (2.70) | 1 (5.00) | NA | NA |
Fnil | 8 (5.97) | 1 (6.67) | NA | NA |
Fpen | 2 (1.75) | 3 (12.50) | 3 (100.00) | NA |
Fves | 0 (0.00) | 1 (5.00) | NA | NA |
Fvir | 2 (1.68) | 1 (6.25) | 1 (100.00) | NA |
Mbac | 6 (3.68) | 11 (32.35) | NA | 1 (50.00) |
Mdom-G | 4 (2.47) | 3 (10.34) | 1 (100.00) | 2 (100.00) |
Msie | 1 (0.66) | 1 (3.45) | NA | 2 (66.67) |
Msyl | 2 (1.30) | 5 (16.67) | 1 (100.00) | 1 (50.00) |
Pans | 1 (0.78) | 2 (13.33) | NA | 1 (100.00) |
Parm | 7 (1.99) | 7 (15.91) | 0 (0.00) | 1 (100.00) |
Pavi-G | 4 (1.11) | 0 (0.00) | 0 (0.00) | 1 (100.00) |
Pavi-S | 4 (1.11) | 1 (2.44) | 0 (0.00) | 1 (100.00) |
Pbet | 5 (2.81) | 5 (12.20) | 0 (0.00) | 1 (100.00) |
Pbre-Y | 5 (2.56) | 9 (20.00) | 1 (33.33) | 2 (100.00) |
Pcom | 2 (1.14) | 0 (0.00) | 1 (16.67) | 1 (100.00) |
Pkan | 7 (1.96) | 0 (0.00) | NA | 1 (100.00) |
Pmir | 11 (4.04) | 6 (18.18) | NA | 2 (100.00) |
Pmum | 6 (1.47) | 3 (6.82) | 0 (0.00) | 3 (100.00) |
Psal | 0 (0.00) | 0 (0.00) | 3 (60.00) | NA |
Psib | 4 (1.15) | 0 (0.00) | 0 (0.00) | 1 (100.00) |
Pyed | 13 (3.49) | 19 (47.50) | 1 (50.00) | 2 (100.00) |
Pysb | 3 (1.69) | 6 (14.29) | 0 (0.00) | 1 (50.00) |
Pyuc | 3 (1.70) | 2 (4.65) | 1 (100.00) | 1 (50.00) |
Rochi | 21 (17.07) | 6 (46.15) | 2 (100.00) | NA |
Rorug | 3 (2.44) | 0 (0.00) | 2 (100.00) | NA |
Ruchi | 6 (2.58) | 6 (10.17) | 0 (0.00) | 2 (100.00) |
Spoh | 5 (3.18) | 10 (28.57) | NA | 1 (100.00) |
Gurb | 7 (6.36) | 4 (11.43) | 0 (0.00) | 3 (100.00) |
Pser | 3 (1.50) | 4 (8.70) | 2 (28.57) | 1 (100.00) |
Total | 164 (2.45) | 125 (11.64) | 19 (40.43) | 33 (86.84) |