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Table 1 Colocalization of miRNA and piRNA sequences in the A. latifasciata genome. S, strand; T:S; transcription and strand

From: First characterization of PIWI-interacting RNA clusters in a cichlid fish with a B chromosome

Contig miRNA piRNA
miRNA start: end S miRNA ID piRNA cluster start: end T:S piRNA cluster Gonad expression
miRNAs and piRNAs not superposed
 NODE_413592 23358: 23437 + novel_27198 5015: 11188 Mono:− 161 MB−, MB+
 NODE_659880 5542: 5604 + novel_40237 1: 5034 Mono:− 297 FB+ FB−
 NODE_530411 42958: 43045 + novel_33801 46001: 52942 Mono:+ 230 FB+ FB−
miRNAs and piRNAs superposed
 NODE_540432 60460: 60520 miR-17b-1 58002: 63335 Mono:+ 235 FB−, FB+, MB−, FB+
61062: 61118 + novel-34307
61235: 61302 + novel-34310
61365: 61424 + novel-34311
61471: 61530 + novel-34313     
 NODE_374673 36480: 36543 + miR-146b 35407: 36661 Mono:+ 146 FB−, FB+, MB−
 NODE_347176 36121: 36181 + miR-21-1 35371: 38453 Mono:− 134 FB−, FB+
 NODE_34239 37421: 37486 + miR-30a-1 36149: 39395 Mono:+ 133 FB−, MB+
37756: 37816 + miR-30b
 NODE_158712 303: 365 + miR-10c 304: 3733 Mono:+ 33 FB+
 NODE_566122 1109: 1162 + novel_35680 2: 5452   248 FB+
 NODE_749189 27328: 27349 + miR-19a-5p 25083: 30798 Mono:+ 330 FB−, FB+, MB−, FB+
27674: 27696 + miR-19b-5p
 NODE_319315 10039: 10120 + novel_21996 7: 10614 Mono:+ 127 MB−, MB+
 NODE_6163 99: 153 + novel_675 10: 4241 Bi:+/ − 270 FB+ FB−
 NODE_27951 2471: 2536 + novel_2628 6: 3836 Mono:+ 107 FB+ FB−
 NODE_960524 12443: 12504 + mir-21a 12344: 14456 Mono:− 368 FB+ FB−
 NODE_581740 1963: 2049 novel_36349 1: 4010 Mono:− 253 FB+ FB−
 NODE_81238 848: 916 novel_6616 9: 2856 Mono:− 344 FB−