Table 1 Colocalization of miRNA and piRNA sequences in the A. latifasciata genome. S, strand; T:S; transcription and strand
From: First characterization of PIWI-interacting RNA clusters in a cichlid fish with a B chromosome
Contig | miRNA | piRNA | |||||
|---|---|---|---|---|---|---|---|
miRNA start: end | S | miRNA ID | piRNA cluster start: end | T:S | piRNA cluster | Gonad expression | |
miRNAs and piRNAs not superposed | |||||||
 NODE_413592 | 23358: 23437 | + | novel_27198 | 5015: 11188 | Mono:− | 161 | MB−, MB+ |
 NODE_659880 | 5542: 5604 | + | novel_40237 | 1: 5034 | Mono:− | 297 | FB+ FB− |
 NODE_530411 | 42958: 43045 | + | novel_33801 | 46001: 52942 | Mono:+ | 230 | FB+ FB− |
miRNAs and piRNAs superposed | |||||||
 NODE_540432 | 60460: 60520 | − | miR-17b-1 | 58002: 63335 | Mono:+ | 235 | FB−, FB+, MB−, FB+ |
61062: 61118 | + | novel-34307 | |||||
61235: 61302 | + | novel-34310 | |||||
61365: 61424 | + | novel-34311 | |||||
61471: 61530 | + | novel-34313 | Â | Â | Â | Â | |
 NODE_374673 | 36480: 36543 | + | miR-146b | 35407: 36661 | Mono:+ | 146 | FB−, FB+, MB− |
 NODE_347176 | 36121: 36181 | + | miR-21-1 | 35371: 38453 | Mono:− | 134 | FB−, FB+ |
 NODE_34239 | 37421: 37486 | + | miR-30a-1 | 36149: 39395 | Mono:+ | 133 | FB−, MB+ |
37756: 37816 | + | miR-30b | |||||
 NODE_158712 | 303: 365 | + | miR-10c | 304: 3733 | Mono:+ | 33 | FB+ |
 NODE_566122 | 1109: 1162 | + | novel_35680 | 2: 5452 |  | 248 | FB+ |
 NODE_749189 | 27328: 27349 | + | miR-19a-5p | 25083: 30798 | Mono:+ | 330 | FB−, FB+, MB−, FB+ |
27674: 27696 | + | miR-19b-5p | |||||
 NODE_319315 | 10039: 10120 | + | novel_21996 | 7: 10614 | Mono:+ | 127 | MB−, MB+ |
 NODE_6163 | 99: 153 | + | novel_675 | 10: 4241 | Bi:+/ − | 270 | FB+ FB− |
 NODE_27951 | 2471: 2536 | + | novel_2628 | 6: 3836 | Mono:+ | 107 | FB+ FB− |
 NODE_960524 | 12443: 12504 | + | mir-21a | 12344: 14456 | Mono:− | 368 | FB+ FB− |
 NODE_581740 | 1963: 2049 | − | novel_36349 | 1: 4010 | Mono:− | 253 | FB+ FB− |
 NODE_81238 | 848: 916 | − | novel_6616 | 9: 2856 | Mono:− | 344 | FB− |