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Table 5 Copy number divergent, heterozygous, and positively selected genes

From: A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

Category

Number of genes

Linked to type 2 diabetes

Comment

Human-house mouse orthologs

18,951

3567

Based on the MGI orthologs table

Human-Nile rat orthologs

16,235

3295

Based on the NCBI Gene database

Duplicated in mouse but not in Nile rat

368

15

 

Duplicated in Nile rat but not in mouse

117

21

 

Mouse genes missing in Nile rat

218

10

Homozygous-missing only

Named Nile rat genes missing in mousea

69

7

See footnote

Non-synonymous SNVs supported by Iso-seq

208

42

 

Positively selected

119

19

 
  1. aAssigned names other than locus numbers by NCBI, no mouse genes mapped by TOGA, and names do not occur in the MGI table of human-mouse orthologs