Fig. 3
Transcriptional reprogramming of N. farcinica for adaptation to infection. a Heatmap of the enriched genes involved in the biosynthesis of siderophore group nonribosomal peptides identified by KEGG pathway analysis. No: Unknown KEGG pathway. b Venn diagram illustrating the number of DEGs of N. farcinica at 6 and 3 hpi compared with 1 hpi (log2-fold change ≥ 1, adjusted P value ≤ 0.05). The number of genes was 965 at 6 hpi compared with 1 hpi and 109 at 3 hpi compared with 1 hpi, and the number of common DEGs was 66. c Heatmap of selected bacterial transcripts (66 DEGs) that differentially expressed both at 3 and 6 hpi