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Table 3 Datasets analysed using SyMBac

From: Synthetic Micrographs of Bacteria (SyMBac) allows accurate segmentation of bacterial cells using deep neural networks

Dataset

Optics

Biology

Notable features

Lugagne et al. (exponential)

100× oil

E. coli in balanced growth

Poor contrast data

Bakshi et al. (exponential)

100× oil (NA = 1.30)

E. coli in balanced growth

High contrast data

Bakshi et al. (stationary)

100× oil (NA = 1.30)

E. coli in stationary phase

Small stacked cells

Bakshi et al. 60× (exponential)

40× air + 1.5× post mag (NA = 0.95)

E. coli in balanced growth

Low resolution + non-uniform illumination