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Table 1 G-quadruplex sequences found by QGRS Mapper in the 3′UTR of cell protrusion-localized RNAs

From: Folylpolyglutamate synthetase mRNA G-quadruplexes regulate its cell protrusion localization and enhance a cancer cell invasive phenotype upon folate repletion

Gene

Accession

Positiona

Length

QGs

G-score

Refb

FPGS

NM_004957

116

22

GGGGCCAGGGCTTTGGGATGGG

70

58, current

377

36

GGGAAGGGAGAGGGCCTCTGCCTGGGACACTGCGGG

70

CFL1

NM_005507

89

29

GGGCTGGGGGGATCCCAGCAGGGGGAGGG

66

48, 58, 69

FSCN1

NM_003088

339

28

GGGACGGTTGGGGGCTGGGAGCCCTGGG

70

58, 70

493

23

GGGAAGGGAAGCTGTCGGGTGGG

65

670

19

GGGCGGGTAGGGGTGTGGG

70

FLNA

NM_001456

233

20

GGGAGGGGTGAGGGATGGGG

71

58, 69

FLNB

NM_001457

1028

44

GGGTCTTTGGCCTGAAAGTTGGGAATGGTTGGGGGAGAGAAGGG

62

58, 69

RAB13

NM_002870

57

40

GGGAGTGAGCAGGGGAGAAATAGCAGAGGGGCTTGGAGGG

67

56, 69, 71, 72

ACTR2

NM_005722

399

29

GGGATGGGGGGTGGTTCGGGATGGGTGGG

71

50, 70, 73

564

33

GGGTTTTGTTGCGGGGGGGAGGGTAACAATGGG

68

1819

39

GGGCCCGTACCTACTGGCAGTTGGGTTCAGGGAAATGGG

57

ARPC4

NM_005718

96

20

GGGAGTTGGGTTGGGGTGGG

70

69, 72

626

44

GGGGCCCAAAAGCCGGGCAACCTCTGGCTACAGGGGCCATTGGG

63

STAT3

NM_139276

248

28

GGGGATGTGGCGGGGGGTGGCTAGAGGG

64

57, 58

1989

43

GGGCTTACCATTGGGTTTAAATCATAGGGACCTAGGGCGAGGG

70

CAMK2A

NM_015981

335

37

GGGCTGGTGCCCACCAGGGGCTGGGGAGAAGGAGGGG

63

67, 68

886

39

GGGTCAGGTTGGAAGGGGTGTAGGAAGAGGGGTGAGGGG

66

2674

39

GGGTGGGCAGCCACCTGGTGCCACCACAGGGCACCAGGG

52

3134

30

GGGGGGGGCGGGTGGGATGGGAAGAAGGGG

72

CAPZB

NM_004930

453

26

GGGGTTGGGGGTCGTGGGGACAGGGG

107

58, 70, 72

547

20

GGGGTGGGGGCTGGGGGGGG

106

  1. FPGS folylpolyglutamate synthase, CFL1 cofilin 1, FSCN1 fascin, FLNA filamin A, FLNB filamin B, RAB13 Ras-related protein Rab-13, ACTR2 actin-related protein 2, ARPC4 actin-related protein 2/3 complex subunit 4, STAT3 signal transducer and activator of transcription 3, CAMK2A calcium/calmodulin-dependent protein kinase type II subunit alpha, CAPZB F-actin-capping protein subunit beta
  2. aNucleotide position within the 3′UTR
  3. bReference papers demonstrating the protrusion localization/enrichment of each RNA