Fig. 1

Genomic features of the R. solani AG1-IA genome assembly. The Circose diagram showing the density of heterozygous SNPs, genes and transposons in 100 kb with 10-kb sliding windows was presented. The scale used for heterozygous SNPs was 0–3000, for the percentage of transposable elements was 0–100 and for the percentage of protein-coding genes was 0–100. Positions of genes, secondary metabolite-associated gene clusters, CAZymes, effectors genes and PHI-base genes were marked by coloured lines according to their coordinates. Each duplicated syntenic gene blocks are denoted with different colours. Contig names are displayed around the circle. The synteny between two duplicated blocks marked with red boxes is shown below. The density and the coordinates of TEs in each block are shown by the density curve and black lines. Light colours within the duplicated blocks denote non-syntenic regions