Fig. 5
Genomic variations in the Indian isolates of R. solani AG1-IA and identification of genomic regions of high and low variations. Diversity metrics, presented as average pair-wise nucleotide diversity θπ (brown line, min = 0, max = 0.5), θ⍵ (blue line, min = 0, max = 0.5), FST (red line, min = 0, max = 1.0) and Tajima’s D (grey line, min = − 3, max = + 3). The regions in the first percentile of Tajima’s D distribution denoting purifying selection are highlighted in red, and the 99th percentile regions undergoing balancing selection are highlighted in green colour. The gene density plotted in orange colour. Gene density and FST are plotted in a 100-kb sliding window. The other values are plotted in the 500-SNP sliding window with step size 100 SNP using Circos