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Table 2 Number of differentially expressed genes located nearby transposable element (TE) insertions. d.f.: degrees of freedom (Additional file 9: Table S8A-D)

From: Gene expression differences consistent with water loss reduction underlie desiccation tolerance of natural Drosophila populations

 

Upregulated genes with TEs nearby

Chi-square test (post hoc test p value)

Downregulated genes with TEs nearby

Chi-square test (post hoc test p value)

Total number of DEGs with TEs nearby

Chi-square test

All DEGs

11 (9.7%)

1.1543, df = 1, p-value = 0.2826

127 (9.8%)

23.249, df = 1, p-value = 1.423e − 06, (1.22E − 04, depleted)

138 (9.8%)

18.895, df = 1, p-value = 1.381e − 05 (4.60E − 05, depleted)

Tolerant DEGs

19 (13%)

1.4124, df = 1, p-value = 0.2347

54 (7.5%)

3.7558, df = 1, p-value = 0.05262

73 (8.5%)

1.469, df = 1, p-value = 0.2255

Sensitive DEGs

1 (3%)

NA

0

NA

1 (3%)

NA

Basal DEGs

226 (14.3%)

4.7876, df = 1, p-value = 0.02866 (depleted)

189 (10%)

3.7778, df = 1, p-value = 0.05194

415 (12%)

10.144, df = 1, p-value = 0.001448 (5.23E − 03, depleted)