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Table 1 Candidate sex determination genes with gonozooid- and sex-specific expression at an expression threshold of 1 FPKM

From: XY sex determination in a cnidarian

 

Expression (FKPM)

Analysis

 

Gastro

Female gono

Male gono

NRRa

SATCb

Female coverage deficitc

Commentd

HyS1036.2

0.15

22.62

0.47

 

x

 

Helix-loop-helix domain-containing protein

HyS2624.2

0.00

12.47

0.00

 

x

 

Unknown function

HyS0007.332

0.00

9.66

0.00

x

  

Unknown function

HyS0116.3

0.00

5.77

0.00

x

x

 

Unknown function

HyS0070.121

0.00

2.19

0.30

 

x

 

Reverse transcriptase-like protein

HyS0120.5

0.00

1.64

0.00

x

x

 

Unknown function

HyS0328.2

0.00

1.05

0.00

 

x

 

Unknown function

HyS0070.32

0.51

1.03

0.14

 

x

 

Headcase protein

HyS0007.350

0.36

1.35

0.87

x

  

Unknown function

HyS0070.46

0.34

0.11

358.41

 

x

 

Unknown function

HyS0057.51

0.84

0.03

314.84

x

  

WH1/EVH1 domain-containing protein

HyS0057.46

1.00

0.00

192.60

x

  

Cyclic nucleotide-binding domain-containing protein

HyS0007.291

0.27

0.15

115.53

x

  

Unknown function

HyS0057.47

0.00

0.00

67.81

x

  

Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel

HyS0067.10

0.16

0.00

30.26

x

x

 

Unknown function

HyS0070.23

0.45

0.00

27.85

 

x

 

Unknown function

HyS0070.81

0.07

0.00

18.79

 

x

 

Unknown function

HyS0113.16

0.76

0.00

6.41

x

x

x

Unknown function

HyS0067.3

0.45

0.03

5.67

x

x

 

Likely KDZ transposase

HyS0113.15

0.00

0.00

4.61

x

x

x

Unknown function

HyS0067.73

0.00

0.00

4.37

x

x

 

Unknown function

HyS0069.15

0.50

0.52

4.75

 

x

 

ATP-dependent helicase-like

HyS0007.328

0.27

0.24

3.76

x

  

Cupin-domain-containing protein

HyS0057.18

0.00

0.00

3.30

x

  

Unknown function

HyS0067.71

0.59

0.00

2.85

x

x

 

Unknown function

HyS4443.1

0.37

0.16

2.20

 

x

 

Unknown function

HyS0057.124

0.00

0.09

1.81

x

 

x

COUP-TF-like nuclear hormone receptor

HyS0057.129

0.31

0.12

1.82

x

  

COUP-TF-like nuclear hormone receptor

HyS0069.70

0.00

0.00

1.64

 

x

 

Unknown function

HyS1036.1

0.03

0.31

1.82

 

x

 

U3 small nucleolar ribonucleoprotein complex, subunit MPP10

HyS0070.5

0.14

0.00

1.45

 

x

 

Ankyrin repeat-containing protein

HyS0116.7

0.93

0.91

2.20

x

x

 

HECT domain-containing protein

HyS0069.45

0.00

0.00

1.19

 

x

 

Unknown function

HyS0057.71

0.67

0.06

1.20

x

  

CXC domain-containing protein-like

HyS0067.4

0.06

0.00

1.07

x

x

 

Brinker DNA-binding domain containing protein

HyS0007.327

0.00

0.00

1.02

x

  

Unknown function

HyS0070.97

0.97

0.17

1.07

 

x

 

Unknown function

HyS0057.113

0.44

0.51

1.27

x

x

 

Similar to SCAN-domain-containing protein

  1. aIs in the non-recombining region of linkage group 4
  2. bFlagged as sex-linked by SATC
  3. cGene with a deficit in coverage in females vs males
  4. dAuthors’ comment on potential homology or function of gene product
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BMC Biology

ISSN: 1741-7007

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