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Table 1 Twenty-seven genomes of O. europaea used in the analysis. Columns show taxon, geographical origin, plastid group [11], ploidy level, genomes analysed, and data source

From: Phylogenomics of the Olea europaea complex using 15 whole genomes supports recurrent genetic admixture together with differentiation into seven subspecies

Taxon (subspecies)

Geographic origin

Plastid group

Ploidy level

Genome analysed

Source

europaea var. europaea cv. ‘Farga’

Spain (Boadilla/La Senia)

E3.1

2x

nuclear, plastid, mitochondrial

ENA (PRJEB4992)

europaea var. europaea cv. 'Lechin de Sevilla'

Spain

E2.3

2x

nuclear, plastid, mitochondrial

ENA (PRJEB35540)

europaea var. europaea cv. ‘Beladi’

Lebanon

E1.1

2x

nuclear, plastid, mitochondrial

ENA (PRJEB35540)

europaea var. sylvestris

Spain (Pechón)

E3

2x

nuclear, plastid, mitochondrial

ENA (PRJEB35540)

europaea var. sylvestris 'W4R183'

Spain

E1

2x

nuclear, plastid, mitochondrial

NCBI (SRR9860503)

europaea var. sylvestris 'W3R78'

Spain (Menorca)

E2

2x

nuclear, plastid, mitochondrial

NCBI (SRR9860505)

europaea var. sylvestris 'Stavrovouni 11'

Cyprus

E1.4

2x

plastid

NCBI (HF558645)

europaea var. sylvestris 'Haut Atlas 1'

Morocco (High Atlas)

E2

2x

plastid

NCBI (NC_015401)

europaea var. sylvestris 'Gue de Constantine 20'

Algeria (Gue de Constantine)

E3

2x

plastid

NCBI (FN997651)

europaea var. sylvestris ‘Oeiras 1’

Portugal

E3.1

2x

plastid

NCBI (MG255763)

europaea var. sylvestris ‘Vallee du Fango 5’

France

E2.1

2x

plastid

NCBI (MG255762)

maroccanaa

Morocco (Agadir)

M

6x

nuclear, plastid, mitochondrial

Olive genome project

maroccana 'Immouzzer S1'

Morocco (High Atlas)

M

6x

plastid

NCBI (NC_015623)

cerasiformisa

Portugal (Madeira)

M

4x

nuclear, plastid, mitochondrial

Olive genome project

guanchicaa

Spain (Tenerife)

M

2x

nuclear, plastid, mitochondrial

Olive genome project

guanchica ‘La Gomera 10’

Spain

M-g1

2x

plastid

NCBI (MG255764)

guanchica-w6

Spain (Tenerife)

M

2x

nuclear, plastid, mitochondrial

NCBI (SRR9860513)

guanchica-w5

Spain (Gran Canaria)

M

2x

nuclear, plastid, mitochondrial

NCBI (SRR9860515)

laperrineia

Sahara

E1.1

2x

nuclear, plastid, mitochondrial

Olive genome project

laperrinei ‘Adjelella 10’

Algeria

E1-l1

2x

plastid

NCBI (MG255765)

cuspidata-R

Reunion island

A

2x

nuclear, plastid, mitochondrial

ENA (PRJEB35540)

cuspidata-Sa

South Africa

A

2x

nuclear, plastid, mitochondrial

Olive genome project

cuspidata-Ia

Iran

C1

2x

nuclear, plastid, mitochondrial

Olive genome project

cuspidata 'Almihwit 5.1'

Yemen

C2

2x

plastid

NCBI (FN996943)

cuspidata 'Guanghzou 1'

China

C1

2x

plastid

NCBI (FN996944)

cuspidata 'Maui 1'

USA (Hawaii-Maui)

A

2x

plastid

NCBI (NC_015604)

cuspidata ‘Menagesha Forest 14’

Ethiopia

C2

2x

plastid

NCBI (MG255760)

  1. aSamples sequenced in this project