Table 2 MSP1a R1 and RL repeat sequences of unique sequences unambiguously associated to only one ecoregion cluster, including the consensus sequence of the isolates of that cluster.
MSP1a Repeat | Unique sequences | Consensus sequence | Other strains and number of substitutions |
|---|---|---|---|
R1/Ecoregion 1 | 4, 8, 16, 56, 60, 64, 67, gamma, pi, tau | ***SSA***QQ*SSV*S*S**AS*SSQ*G-- | A(0), B(0), D(1), T(0), 13(1), 23(1), alfa(0) |
R1/Ecoregion 2 | 28, 48, 53, E, F, epsilon | ***SS**GQQQESSV***S*-ASTSSQLG-- | A(0), B(0), L(1), T(7),13(1), 23(1), alfa(0) |
R1/Ecoregion 3 | 1, 3, 5, 6, 27, 33, 34, 39, M, O, Q, U | **SSSA*GQQQESSV*****QA*TSSQLG-- | A(0), D(0) |
R1/Ecoregion 4 | I, J, K | *D*S*A*GQQQESSVSSQS*QASTSSQLG-- | A(0), B(0), L(0), alfa(0) |
RL/Ecoregion 1 | 8, 9, 12, 15, 59, 61, 66 | ***SSA**QQQES*V*SQS**ASTSSQ*G-- | B(0), C(0), M(0), 18(0), 27(0), gamma(0) |
RL/Ecoregion 2 | 10, 31, 52, pi, beta | *DSSSA**QQQ*S*V*S*S*-ASTSSQLG-- | F(0), H(0), M(0), 27(0), gamma(0) |
RL/Ecoregion 3 | 3, 7, 35, 37, 38, 44, E, N, P, Q, U, ro | *DSSSAS*QQQESS**S*S*QA**S*Q*G-- | B(1), F(0), H,18(0), gamma(0) |
RL/Ecoregion 4 | none | B, C, H |