From: Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
Phylum | List of constituent contaminant genera |
---|---|
Proteobacteria | Alpha-proteobacteria: |
Afipia, Aquabacteriume, Asticcacaulis, Aurantimonas, Beijerinckia, Bosea, Bradyrhizobiumd, Brevundimonasc, Caulobacter, Craurococcus, Devosia, Hoefleae, Mesorhizobium, Methylobacteriumc, Novosphingobium, Ochrobactrum, Paracoccus, Pedomicrobium, Phyllobacteriume, Rhizobiumc,d, Roseomonas, Sphingobium, Sphingomonasc,d,e, Sphingopyxis | |
Beta-proteobacteria: | |
Acidovoraxc,e, Azoarcuse, Azospira, Burkholderiad, Comamonasc, Cupriavidusc, Curvibacter, Delftiae, Duganellaa, Herbaspirilluma,c, Janthinobacteriume, Kingella, Leptothrixa, Limnobactere, Massiliac, Methylophilus, Methyloversatilise, Oxalobacter, Pelomonas, Polaromonase, Ralstoniab,c,d,e, Schlegelella, Sulfuritalea, Undibacteriume, Variovorax | |
Gamma-proteobacteria: | |
Acinetobactera,d,c, Enhydrobacter, Enterobacter, Escherichiaa,c,d,e, Nevskiae, Pseudomonasb,d,e, Pseudoxanthomonas, Psychrobacter, Stenotrophomonasa,b,c,d,e, Xanthomonasb | |
Actinobacteria | Aeromicrobium, Arthrobacter, Beutenbergia, Brevibacterium, Corynebacterium, Curtobacterium, Dietzia, Geodermatophilus, Janibacter, Kocuria, Microbacterium, Micrococcus, Microlunatus, Patulibacter, Propionibacteriume, Rhodococcus, Tsukamurella |
Firmicutes | Abiotrophia, Bacillusb, Brevibacillus, Brochothrix, Facklamia, Paenibacillus, Streptococcus |
Bacteroidetes | Chryseobacterium, Dyadobacter, Flavobacteriumd, Hydrotalea, Niastella, Olivibacter, Pedobacter, Wautersiella |
Deinococcus-Thermus | Deinococcus |
Acidobacteria | Predominantly unclassified Acidobacteria Gp2 organisms |