QC filtering procedure | Number of variants removed |
---|---|
Multi-allelic or multi-nucleotide | 1,110,071 |
Cumulative coverage outside of twofold range of global median coverage | 1,158,822 |
MAF in 17 monkeys <25 % | 6,859,481 |
>0 % missing data | 164,781 |
Within 5 bp of another site | 21,406 |
TOTAL | 9,314,561 |