Table 1 Genome assembly and annotation statistics
From: Hybridisation has shaped a recent radiation of grass-feeding aphids
Species | S. miscanthi | S. miscanthi | S. avenae | M. dirhodum |
|---|---|---|---|---|
Assembly | Simis_v1 | Simis_v2 | Siave_v2.1 | Siave_v1.1 |
Sequencing approacha | IL + PB + HiC | IL + PB + HiC | IL + HiC | IL |
Base pairs (Mb) | 397.9 | 403.1 | 366.0 | 387.0 |
% Ns | 0.01 | 0.13 | 0.80 | 0.08 |
Number of contigsb | 1,148 | 1,889 | 23,024 | 28,240 |
Contig N50 (Mb)b | 1.61 | 1.92 | 0.04 | 0.04 |
Number of scaffolds | 655 | 833 | 14,626 | 24,973 |
Scaffold N50 (Mb) | 32.70 | 37.52 | 29.84 | 0.05 |
% of asembly in chromosome length scaffolds | 94.8 | 96.2 | 74.0 | NA |
Protein coding genes | 16,006 | 21,798 | 19,919 | 22,349 |
Transcripts | 16,006 | 23,875 | 23,368 | 24,826 |
Reference | Jiang et al. 2019 | This study | This study | This study |