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Fig. 3 | BMC Biology

Fig. 3

From: Analysis of five near-complete genome assemblies of the tomato pathogen Cladosporium fulvum uncovers additional accessory chromosomes and structural variations induced by transposable elements effecting the loss of avirulence genes

Fig. 3

A nonreciprocal translocation between Chr7 and Chr2 causes the deletion of the Avr9 locus. A Alignment of the first 100 kb of Chr7 from isolates Race 0WU which has Avr9 and Race 2.4.9.11 in which Avr9 is lost. The 15 kb region that harbors Avr9 in isolate Race 0WU is absent in isolate Race 2.4.9.11. B Alignment of the first 20 kb of Chr7 and Chr2 of isolate Race 2.4.9.11. The left-hand side tip of Chr7 of isolate Race 2.4.9.11 is identical to the sequence of the left-hand side tip of Chr2, and both sequences are flanked by truncated copies of a Ty1/Copia retrotransposon. C Alignment of the first 20 kb of Chr7 and Chr2 of isolate Race 0WU. Truncated copies of the same Ty1/Copia retrotransposon are present in the first 15 kb of Chr7 and Chr2 of isolate Race 0WU. D Representation of the intact Ty1/Copia retrotransposon shown in B and C. LTR, long terminal repeat; GAG, group-specific antigen domain; INT, integrase domain; RV, reverse transcriptase domain; RNase, ribonuclease H domain

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BMC Biology

ISSN: 1741-7007

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