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Fig. 6 | BMC Biology

Fig. 6

From: Analysis of five near-complete genome assemblies of the tomato pathogen Cladosporium fulvum uncovers additional accessory chromosomes and structural variations induced by transposable elements effecting the loss of avirulence genes

Fig. 6

Repetitive regions in the genome of Cladosporium fulvum are asymmetrically affected by RIP mutations. Shown are diagrams of the 13 core chromosomes of C. fulvum isolate Race 0WU as rectangles with three tracks. From top to bottom, tracks indicate regions affected by RIP (RIPed) (green lines), repetitive DNA content (black lines), and gene content (red lines). The lines on top of the tracks represent average nucleotide diversity values calculated using either transitions (πTs) (red lines) or transversions (πTv) (blue lines) among the complete genomes of five isolates. The figure shows genomic regions of high variability due to transitions in RIPed regions, as well as islands of RIPed regions with almost no variability. Nucleotide diversity was calculated within 20 kb windows

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BMC Biology

ISSN: 1741-7007

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