Skip to main content

Table 1 Genome assembly statistics of five Cladosporium fulvum isolates

From: Analysis of five near-complete genome assemblies of the tomato pathogen Cladosporium fulvum uncovers additional accessory chromosomes and structural variations induced by transposable elements effecting the loss of avirulence genes

 

Race 5a

Race 0WU

Race 4

Race 2.4.5.9.11 IPO

Race 2.4.9.11

Assembly size (bp)

67,169,167

67,489,499

66,963,592

67,158,745

67,784,504

GC (%)

48.9

48.9

49.0

48.9

48.9

Number of chromosomes

14

15

13

14

14

Number of unplaced contigs

0

2

2

0

0

Contig N50 (Mb)

5.77

5.62

5.77

5.78

5.82

Contig L50

5

5

5

5

5

mtDNA size (bp)

NA

86,642

86,835

86,771

86,731

Repetitive DNA (%)

50.25

50.15

50.00

49.92

50.47

 - Short tandem repeats

0.45

0.46

0.45

0.46

0.46

 - Dispersed repeats

49.80

49.69

49.55

49.46

50.01

  1. a[17]