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Table 1 General features of Alligatoridae satellitomes characterized with TAREAN. SF = superfamily, RUL = repeat unit length, TSI = tandem structure index. Divergence per satDNA was expressed as the percentage of Kimura divergence. SatDNAs that have 50% or more identity belong to the same group

From: Evolution of ancient satellite DNAs in extant alligators and caimans (Crocodylia, Reptilia)

Species

SF

satDNA

RUL

A + T (%)

Abundance (%)

Divergence (%)

TSI

Group

Caiman yacare

1

CyaSat01-41

41

63.4

2.211

8.79

0.91

1

 

CyaSat02-40

40

50.0

0.212

8.35

0.98

3

2

CyaSat03-60

60

41.7

0.099

18.50

0.98

2

1

CyaSat04-41

41

58.5

0.084

21.64

0.89

1

2

CyaSat05-200

200

43.5

0.062

8.67

0.96

2

1

CyaSat06-286

286

57.3

0.061

4.29

0.61

1

Caiman latirostris

1

ClaSat01-41

41

46.3

1.077

11.70

0.93

1

 

ClaSat02-6317

6317

51.0

0.733

7.94

0.87

 

2

ClaSat03-183

183

40.4

0.268

9.30

0.87

2

 

ClaSat04-536

536

26.1

0.262

4.83

0.92

 
 

ClaSat05-40

40

47.5

0.207

9.51

0.87

3

1

ClaSat06-1063

1063

53.3

0.181

9.09

0.74

1

1

ClaSat07-320

320

53.1

0.129

8.40

0.89

1

1

ClaSat08-800

800

55.9

0.129

14.84

0.99

1

1

ClaSat09-285

285

46.5

0.074

3.90

0.95

1

2

ClaSat10-60

60

40

0.069

17.79

0.4

2

1

ClaSat11-547

547

51.7

0.069

9.81

0.69

1

2

ClaSat12-24

24

33.3

0.053

16.21

0.82

2

 

ClaSat13-398

398

32.7

0.042

8.61

0.41

 

Melanosuchus niger

1

MniSat01-41

41

58.5

1.582

8.99

0.87

1

1

MniSat02-246

246

55.7

0.442

5.54

0.74

1

 

MniSat03-60

60

40.0

0.240

17.03

0.96

2

 

MniSat04-40

40

52.5

0.110

11.23

0.97

3

1

MniSat05-248

248

55.6

0.045

10.56

0.57

1

1

MniSat06-41

41

56.1

0.032

18.32

0.90

1

Paleosuchus trigonatus

1

PtrSat01-41

41

41.5

1.092

05.02

0.91

1

2

PtrSat02-24

24

37.5

0.705

10.34

0.98

2

1

PtrSat03-147

147

55.1

0.594

10.02

0.95

1

1

PtrSat04-99

99

51.5

0.332

04.07

0.72

1

1

PtrSat05-41

41

53.7

0.328

12.86

0.92

1

2

PtrSat06-100

100

45

0.252

9.69

0.97

2

1

PtrSat07-41

41

56.1

0.155

16.09

0.96

1

3

PtrSat08-214

214

28

0.14

01.05

0.57

3

 

PtrSat09-490

490

31.6

0.112

4.29

0.96

 

3

PtrSat10-40

40

45

0.112

12.41

0.38

3

1

PtrSat11-23

23

52.2

0.028

13.70

0.05

1

Alligator sinensis

 

AsiSat01-1717

1717

50.6

0.234

13.39

0.95

 
 

AsiSat02-60

60

38.3

0.154

3.51

0.99

 
 

AsiSat03-96

96

34.4

0.02

9.25

0.93

3