Fig. 7
From: Introgressions lead to reference bias in wheat RNA-seq analysis
The impact of reference bias on the quantification of triads in which one homoeologue has been introgressed. A Estimated expression level of introgressed D homoeologues compared to the wheat B homoeologues and wheat D homoeologues compared to wheat B homoeologues, using either Chinese Spring or pantranscriptome reference as targets for kallisto pseudoalignment. Each point represents one accession. B Expression level of triads from where the D homoeologue is an introgressed gene in a subset of lines, using either Chinese Spring or the pantranscriptome reference as targets for kallisto pseudoalignment. The centre line of the boxplots = the median; the box limits = the upper and lower quartiles, the whiskers = 1.5 × interquartile range; and the points = outliers