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Table 2 Genes and primers used in polymerase chain reaction (PCR) assays to detect reproductive parasites and control DNA quality

From: The diversity of reproductive parasites among arthropods: Wolbachiado not walk alone

Organism

Gene

Primer (5' – 3')

Annealing temperature

Positive control

Size

Reference

Arthropods

18S rDNA

NSF4/18 – CTGGTTGATYCTGCCAGT *

54°C

Any arthropod

400–450 bp

[72, 73]

  

NSR399/19 – TCTCAGGCTCCYTCTCCGG *

    

Rickettsia sp.

17-kDa

R1 – GCTCTTGCAACTTCTATGTT *

54°C

Adalia decempunctata

434 bp

[67]

  

R2 – CATTGTTCGTCAGGTTGGCG *

    

Wolbachia pipientis

16S rDNA

16Swolb76-99f – TTGTAGCCTGCTATGGTATAACT *

54°C

Culex pipiens

896 bp

[74]

  

16Swolb1012-994r – GAATAGGTATGATTTTCATGA *

    
 

wsp

81F – TGGTCCAATAAGTGATGAAGAAAC

50°C

81F/522R: Aedes albopictus – wAlbB

442 bp

[75]

  

136F – TGAAATTTTACCTCTTTTC

 

172F/691R: Aedes albopictus – wAlbA

514 bp

 
  

172F – ACCTATAAGAAAGACAAG

 

81F/484R: Protocalliphora sp. – wA2

380 bp

 
  

484R – TTTGATCATTCACAGCGT

 

136F/691R: Protocalliphora sp. – wA1

516 bp

 
  

522R – ACCAGCTTTTGCTTGATA

    
  

691R – AAAAATTAAACGCTACTCCA

    

Arsenophonus nasoniae

16S rDNA

ArsF – GGGTTGTAAAGTACTTTCAGTCGT *

52°C

ArsF, ArsF3/ArsR2, ArsR3: Nasonia vitripennis

581–804 bp

This study

  

ArsF2 – CCCTAAGCTTAACTTAGGA *

 

ArsF2/ArsR2: Polistes nympha

612 bp

 
  

ArsF3 – GTCGTGAGGAARGTGTTARGGTT *

    
  

ArsR2 – GTAGCCCTRCTCGTAAGGGCC *

    
  

ArsR3 – CCTYTATCTCTAAAGGMTTCGCTGGATG *

    

Cardinium hertigii

16S rDNA

CLO-f1 – GGAACCTTACCTGGGCTAGAATGTATT *

54°C

Holocnemus pluchei

CLO-f1/CLO-r1: 466 bp

[13]

  

CLO-r1 – GCCACTGTCTTCAAGCTCTACCAAC *

  

ChF/CLO-r1: 953 bp

 
  

ChF – TACTGTAAGAATAAGCACCGGC

   

[12]

Flavobacterium sp.

16S rDNA

FlavF – CGAATAAGTRTCGGCAAACTCCG *

52°C

Coleomegilla maculata

530 bp

This study

  

FlavR – CTAAACTRTTTCYAGCTTATTCG *

    

Spiroplasma ixodetis

16S rDNA

SpixoF – TTAGGGGCTCAACCCCTAACC *

52°C

Adalia bipunctata

810 bp

This study

  

SpixoR – TCTGGCATTGCCAACTCTC *

    

S. poulsonii

16S rDNA

SpoulF – GCTTAACTCCAGTTCGCC *

55°C

Drosophila melanogaster

421 bp

[42]

  

SpoulR – CCTGTCTCAATGTTAACCTC *

    
  1. The sizes of PCR products provided are those of positive controls in base pairs (bp). *Primers used in initial screen of the arthropod collection; the other primers were used to obtain additional sequences.