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Table 2 MSP1a R1 and RL repeat sequences of unique sequences unambiguously associated to only one ecoregion cluster, including the consensus sequence of the isolates of that cluster.

From: Phylogeographic analysis reveals association of tick-borne pathogen, Anaplasma marginale, MSP1a sequences with ecological traits affecting tick vector performance

MSP1a Repeat Unique sequences Consensus sequence Other strains and number of substitutions
R1/Ecoregion 1 4, 8, 16, 56, 60, 64, 67, gamma, pi, tau ***SSA***QQ*SSV*S*S**AS*SSQ*G-- A(0), B(0), D(1), T(0), 13(1), 23(1), alfa(0)
R1/Ecoregion 2 28, 48, 53, E, F, epsilon ***SS**GQQQESSV***S*-ASTSSQLG-- A(0), B(0), L(1), T(7),13(1), 23(1), alfa(0)
R1/Ecoregion 3 1, 3, 5, 6, 27, 33, 34, 39, M, O, Q, U **SSSA*GQQQESSV*****QA*TSSQLG-- A(0), D(0)
R1/Ecoregion 4 I, J, K *D*S*A*GQQQESSVSSQS*QASTSSQLG-- A(0), B(0), L(0), alfa(0)
RL/Ecoregion 1 8, 9, 12, 15, 59, 61, 66 ***SSA**QQQES*V*SQS**ASTSSQ*G-- B(0), C(0), M(0), 18(0), 27(0), gamma(0)
RL/Ecoregion 2 10, 31, 52, pi, beta *DSSSA**QQQ*S*V*S*S*-ASTSSQLG-- F(0), H(0), M(0), 27(0), gamma(0)
RL/Ecoregion 3 3, 7, 35, 37, 38, 44, E, N, P, Q, U, ro *DSSSAS*QQQESS**S*S*QA**S*Q*G-- B(1), F(0), H,18(0), gamma(0)
RL/Ecoregion 4 none   B, C, H
  1. Other strains recorded from more than one ecoregion cluster are included in the last column, stating the number of substitutions in their amino acid sequences as compared with the consensus sequence in that ecoregion cluster (in parentheses).
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BMC Biology

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