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Table 3 Codon-based Z-test for selection results for exon sequences.

From: Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

exon P value
HA:
dN > dS
P value
HA:
dN < dS
test statistic exon P value
HA:
dN > dS
P value
HA:
dN < dS
test statistic
accD 1 0.2013 0.8400 psbK 0.3925 1 0.2735
atpA 1 0.0146 2.2071 psbL 0.0922 1 1.3350
atpB 1 0.0007 3.2809 psbM 0.0125 1 2.2697
atpE 0.0632 1 1.5390 psbN 1 0.1632 0.9854
atpF 0.0888 1 1.3559 psbT 1 0.1193 1.1842
atpH 1 0.0210 2.0561 psbZ 1 0.0783 1.4253
atpI 1 0.0622 1.5477 rbcL 1 0.0000 4.5278
ccsA 1 0.1785 0.9248 rpl2 1 0.0031 2.7867
cemA 1 0.2453 0.6915 rpl14 1 0.0234 2.0097
chlB 1 0.0002 3.6305 rpl16 1 0.0463 1.6957
chlL 1 0.0039 2.7022 rpl20 1 0.0359 1.8161
chlN 1 0.0000 5.9654 rpl22 1 0.0057 2.5720
clpP 0.4634 1 0.0920 rpl23 1 0.2150 0.7919
infA 1 0.1554 1.0177 rpl32 1 0.1692 0.9613
matK 1 0.1628 0.9871 rpl33 1 0.0695 1.4893
petA 1 0.0140 2.2233 rpl36 1 0.1550 1.0194
petB 1 0.0022 2.9021 rpoA 1 0.0691 1.4928
petD 1 0.1025 1.2742 rpoB 1 0.0000 4.2298
petG 1 0.0697 1.4881 rpoC1 1 0.0103 2.3448
petL 0.0791 1 1.4197 rpoC2 1 0.0017 2.9858
petN 1 0.1594 0.9990 rps2 1 0.0583 1.5804
psaA 1 0.0000 5.5339 rps3 1 0.0019 2.9447
psaB 1 0.0000 5.3084 rps4 1 0.0062 2.5373
psaC 1 0.1711 0.9537 rps7 0.0130 1 2.2541
psaI 0.0482 1 1.6756 rps8 1 0.3590 0.3619
psaJ 1 0.4104 0.2270 rps11 1 0.0638 1.5339
psaM 0.4967 1 0.0084 rps12 1 0.1016 1.2795
psbA 1 0.0004 3.4212 rps14 1 0.0984 1.2977
psbB 1 0.0003 3.5747 rps15 1 0.0070 2.4949
psbC 1 0.0002 3.6848 rps18 1 0.1515 1.0343
psbD 1 0.0045 2.6582 rps19 1 0.0863 1.3722
psbE 1 0.0642 1.5310 ycf1 0.0000 1 4.0848
psbF 0.0587 1 1.5769 ycf2 0.0156 1 2.1793
psbH 0.0124 1 2.2732 ycf3 1 0.0813 1.4051
psbI 1 0.1810 0.9151 ycf4 1 0.0531 1.6274
psbJ 0.0916 1 1.3389     
  1. Results shown are overall average of all ingroup pairwise comparisons, with significance at P ≤ 0.05 indicated in bold.