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Table 3 Characteristics of the two mapping sets of markers derived in Stage 4

From: Sequencing strategies and characterization of 721 vervet monkey genomes for future genetic analyses of medically relevant traits

  Approx. 500K mapping set     Approx. 150K mapping set    
CHR N SNP/Mba Max Gapb (BP) Mean Gapb (BP) Mean R2c N SNP/Mba Max Gapb (BP) Mean Gapb (BP) Mean R2c
1 25863 205.2 1074224 4873 0.38 7695 61.1 1112341 16380 0.31
2 16774 185.7 3730217 5385 0.40 4403 48.8 3731818 20515 0.34
3 18390 199.7 1144078 5007 0.38 5653 61.4 1176302 16291 0.33
4 15560 209.3 1663269 4777 0.39 5476 73.7 1689958 13576 0.34
5 15940 211.4 1150416 4730 0.38 4674 62.0 1275087 16132 0.32
6 10112 198.7 1020214 5032 0.36 2792 54.9 1030612 18227 0.29
7 24288 178.9 1518445 5590 0.40 7026 51.8 1631219 19310 0.35
8 28272 220.8 2004329 4530 0.37 9192 71.8 2598031 13933 0.33
9 21550 171.6 1066472 5828 0.38 6456 51.4 1089666 19453 0.33
10 20112 156.4 1043042 6393 0.39 6104 47.5 1050307 21054 0.37
11 25512 198.5 2199143 5038 0.39 7530 58.6 2424911 17072 0.32
12 17587 162.0 1420166 6171 0.39 5615 51.7 1520086 19331 0.34
13 18794 191.1 1516380 5234 0.38 5934 60.4 1518768 16573 0.33
14 19105 177.6 1817866 5632 0.44 5943 55.3 1830044 18099 0.39
15 18395 200.5 1542801 4988 0.39 5110 55.7 1545377 17952 0.32
16 14040 186.9 1023476 5350 0.36 3698 49.3 1026661 20304 0.30
17 15640 217.3 1093222 4602 0.39 4292 59.7 1122085 16754 0.34
18 15291 211.6 1330661 4726 0.41 4623 64.0 1542198 15620 0.35
19 5596 173.5 476395 5765 0.41 1416 43.9 554050 22793 0.35
20 27113 209.3 459070 4778 0.35 8034 62.1 711003 16094 0.28
21 18878 149.6 1477644 6685 0.41 6175 48.9 1502779 20435 0.37
22 15859 158.4 258174 6314 0.43 5064 50.6 422458 19777 0.40
23 16564 202.4 391245 4940 0.38 5118 62.6 732327 15985 0.32
24 18746 223.4 225900 4476 0.37 4889 58.3 325648 17162 0.32
25 18731 221.2 238967 4522 0.37 5563 65.7 421038 15228 0.30
26 12435 217.8 215585 4593 0.38 3324 58.3 270040 17166 0.31
27 12055 259.1 284037 3860 0.37 3470 74.8 425185 13379 0.31
28 4122 207.4 199874 4822 0.43 1046 52.7 379794 19003 0.37
29 5839 252.6 112574 3960 0.35 1652 71.5 211468 13998 0.29
  1. aNumber of SNPs per Mb
  2. bMax and mean distance between consecutive SNPs, in basepairs
  3. cAverage of pairwise estimates of windows of five markers