Skip to main content

Table 2 Ancestral sequences of the reassortant clades that were found recombinant by RDP4

From: Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread

Recombinant sequence(s)

Method

RDP [68]

GENECONV [69]

Bootscan [70]

Maxchi [71]

Chimera [72]

SiSscan [73]

PhylPro [74]

LARD [75]

3Seq [76]

I (Baby Blue_Ancestral)

NS

1.16E-02

0.026402

3.68E-06

4.39E-02

3.29E-05

NS

NS

5.77E-09

II (Dark Blue_Ancestral)a

4.92E-02

NS

4.95E-02

NS

NS

NS

NS

NS

NS

VI (GreenL_Ancestral)a

NS

NS

NS

1.17E-03

NS

NS

NS

NS

2.40E-02

IX (Salmon_Ancestral)

NS

NS

NS

3.02E-04

1.72E-04

8.99E-06

NS

NS

2.09E-11

X (Red_Ancestral)

1.81E-02

NS

1.82E-02

NS

NS

1.35E-02

NS

NS

NS

XI (Maroon_Ancestral)

1.81E-02

NS

1.82E-02

NS

NS

1.35E-02

NS

NS

NS

XII (Dark Red_Ancestral)

1.81E-02

NS

1.82E-02

NS

NS

1.35E-02

NS

NS

NS

XIV (Purple_Ancestral)

NS

NS

NS

2.00E-02

NS

9.47E-12

NS

NS

5.74E-04

XV (Lavender_Ancestral)

NS

NS

NS

2.00E-02

NS

9.47E-12

NS

NS

5.74E-04

XVI (Pink_Ancestral)

NS

NS

NS

2.00E-02

NS

9.47E-12

NS

NS

5.74E-04

  1. aTrend of recombination, only 2 out of 3 required methods showed recombination
  2. NS - not significant