Table 1 De novo transcriptome assembly statistics for P. palmivora
Metric | Value |
|---|---|
General assembly statistics | |
Total Trinity 'genes' | 48,088 |
Total Trinity transcripts | 80,258 |
Percent GC | 48.27 |
Smallest contig | 201 |
Largest contig | 217,111 |
Statistics based on all transcript contigs | |
Contig N10 | 6335 |
Contig N20 | 4510 |
Contig N30 | 3443 |
Contig N40 | 2621 |
Contig N50 | 1978 |
Median contig length | 282 |
Average contig length | 788 |
Total assembled bases | 63,247,196 |
Statistics based on the longest isoform per gene | |
Contig N10 | 6738 |
Contig N20 | 4702 |
Contig N30 | 3604 |
Contig N40 | 2724 |
Contig N50 | 2003 |
Median contig length | 273 |
Average contig length | 765 |
Total assembled bases | 36,825,977 |
Eukaryotic BUSCO genes | |
Complete single-copy BUSCOs | 256 |
Complete duplicated BUSCOs | 40 |
Fragmented BUSCOs | 30 |
Missing BUSCOs | 103 |
Total BUSCO groups searched | 429 |
Total BUSCO genes recovered | 326 (76%) |
Phytophthora BUSCOs | 374 |
Updated % recoverable BUSCOs | 87 |