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Table 1 De novo transcriptome assembly statistics for P. palmivora

From: Time-resolved dual transcriptomics reveal early induced Nicotiana benthamiana root genes and conserved infection-promoting Phytophthora palmivora effectors

Metric Value
General assembly statistics
Total Trinity 'genes' 48,088
Total Trinity transcripts 80,258
Percent GC 48.27
Smallest contig 201
Largest contig 217,111
Statistics based on all transcript contigs
Contig N10 6335
Contig N20 4510
Contig N30 3443
Contig N40 2621
Contig N50 1978
Median contig length 282
Average contig length 788
Total assembled bases 63,247,196
Statistics based on the longest isoform per gene
Contig N10 6738
Contig N20 4702
Contig N30 3604
Contig N40 2724
Contig N50 2003
Median contig length 273
Average contig length 765
Total assembled bases 36,825,977
Eukaryotic BUSCO genes
Complete single-copy BUSCOs 256
Complete duplicated BUSCOs 40
Fragmented BUSCOs 30
Missing BUSCOs 103
Total BUSCO groups searched 429
Total BUSCO genes recovered 326 (76%)
Phytophthora BUSCOs 374
Updated % recoverable BUSCOs 87
  1. BUSCO benchmarking universal single-copy orthologues