|
General assembly statistics
|
|
Total Trinity 'genes'
|
48,088
|
|
Total Trinity transcripts
|
80,258
|
|
Percent GC
|
48.27
|
|
Smallest contig
|
201
|
|
Largest contig
|
217,111
|
|
Statistics based on all transcript contigs
|
|
Contig N10
|
6335
|
|
Contig N20
|
4510
|
|
Contig N30
|
3443
|
|
Contig N40
|
2621
|
|
Contig N50
|
1978
|
|
Median contig length
|
282
|
|
Average contig length
|
788
|
|
Total assembled bases
|
63,247,196
|
|
Statistics based on the longest isoform per gene
|
|
Contig N10
|
6738
|
|
Contig N20
|
4702
|
|
Contig N30
|
3604
|
|
Contig N40
|
2724
|
|
Contig N50
|
2003
|
|
Median contig length
|
273
|
|
Average contig length
|
765
|
|
Total assembled bases
|
36,825,977
|
|
Eukaryotic BUSCO genes
|
|
Complete single-copy BUSCOs
|
256
|
|
Complete duplicated BUSCOs
|
40
|
|
Fragmented BUSCOs
|
30
|
|
Missing BUSCOs
|
103
|
|
Total BUSCO groups searched
|
429
|
|
Total BUSCO genes recovered
|
326 (76%)
|
|
Phytophthora BUSCOs
|
374
|
|
Updated % recoverable BUSCOs
|
87
|
