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Table 1 Amaranth assembly statistics

From: Single-molecule sequencing and Hi-C-based proximity-guided assembly of amaranth (Amaranthus hypochondriacus) chromosomes provide insights into genome evolution

Assembly APS1 SRA1 PGA1 PGA1.5 PGA2
Assembly size (Mb) 400.9 376.4 376.7 400.9 403.9
Number of scaffolds 1184 3518 493 287 908
Scaffold N50 size (Mb) 1.091 0.370 22.675 24.672 24.364
Scaffold N50 number 100 243 7 7 7
Longest scaffold (Mb) 7.836 2.519 35.915 37.957 38.125
Assembly scaffolded 87.4% 97.6% 99.7% 99.5% 98.0%
Number of contigs 2883 13,462 13,462 2207 1589
Contig N50 size (Mb) 0.369 0.064 0.064 0.648 1.254
Contig N50 number 249 1582 1582 154 78
Missing bases 0.46% 3.18% 3.26% 0.15% 0.01%
Number of gaps 2075 13,848 16,873 2761 771
Length of gaps (Mb) 1.864 11.975 12.277 0.582 0.046
Assembly size (Mb) and % in top 16 scaffolds 60.5 15.1% 30.1 8.0% 375.2 99.6% 398.6 99.4% 395.8 98.0%
  1. Full assembly statistics are provided in Additional file 1: Table S1
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