|
Assembly
|
APS1
|
SRA1
|
PGA1
|
PGA1.5
|
PGA2
|
|---|
|
Assembly size (Mb)
|
400.9
|
376.4
|
376.7
|
400.9
|
403.9
|
|
Number of scaffolds
|
1184
|
3518
|
493
|
287
|
908
|
|
Scaffold N50 size (Mb)
|
1.091
|
0.370
|
22.675
|
24.672
|
24.364
|
|
Scaffold N50 number
|
100
|
243
|
7
|
7
|
7
|
|
Longest scaffold (Mb)
|
7.836
|
2.519
|
35.915
|
37.957
|
38.125
|
|
Assembly scaffolded
|
87.4%
|
97.6%
|
99.7%
|
99.5%
|
98.0%
|
|
Number of contigs
|
2883
|
13,462
|
13,462
|
2207
|
1589
|
|
Contig N50 size (Mb)
|
0.369
|
0.064
|
0.064
|
0.648
|
1.254
|
|
Contig N50 number
|
249
|
1582
|
1582
|
154
|
78
|
|
Missing bases
|
0.46%
|
3.18%
|
3.26%
|
0.15%
|
0.01%
|
|
Number of gaps
|
2075
|
13,848
|
16,873
|
2761
|
771
|
|
Length of gaps (Mb)
|
1.864
|
11.975
|
12.277
|
0.582
|
0.046
|
|
Assembly size (Mb) and % in top 16 scaffolds
|
60.5 15.1%
|
30.1 8.0%
|
375.2 99.6%
|
398.6 99.4%
|
395.8 98.0%
|
- Full assembly statistics are provided in Additional file 1: Table S1
