From: De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads
 | Short BUSCO | Long BUSCO | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
Description | Complete (%) | Single (n) | Duplicated (n) | Fragmented (n) | Missing (n) | Complete (%) | Single (n) | Duplicated (n) | Fragmented (n) | Missing (n) |
Uncorrected (Canu only) | 49.2 | 437 | 46 | 128 | 371 | 65.0 | 585 | 53 | 122 | 222 |
Nanopolish | Â | Â | Â | Â | Â | 85.4 | 733 | 106 | 73 | 70 |
Bowtie2 + Pilon | 75.6 | 630 | 112 | 95 | 145 | 85.1 | 709 | 127 | 72 | 74 |
HISAT2 + Pilon | 74.7 | 618 | 116 | 101 | 147 | 81.5 | 679 | 122 | 83 | 98 |
Trinity# [de novo] | 90.8 90.7 | 681 441 | 211 450 | 65 64 | 25 27 | 91.3 | 446 | 451 | 59 | 26 |
Trinity# [genome-guided] | 88.4 88.2 | 316 304 | 552 562 | 63 61 | 51 55 | 88.5 | 305 | 564 | 58 | 55 |
Trinity# [Expression-filtered] | 87.9 87.7 | 644 613 | 219 248 | 58 60 | 61 61 | 88.3 | 618 | 249 | 55 | 60 |
Trinity# [collapsed] | 87.2 87 | 786 791 | 71 64 | 58 63 | 67 64 | 87.6 | 796 | 64 | 57 | 65 |
WTSI reference | 73.1 | 677 | 41 | 133 | 131 | 80.6 | 748 | 43 | 125 | 66 |