Table 4 Sequence correction statistics. The number and proportion of classes of sequence corrections are given, calculated using the total number of genome bases mapped by the cDNA reads at coverage >10 (77,335,202). INDELs of three or more were binned together as their individual contribution to variance was less than 1%

312,140

44.2%

0.404%

.

N [1 bp INS]

65,725

9.3%

0.085%

A

G

64,702

9.2%

0.084%

T

C

48,786

6.9%

0.063%

..

NN [2 bp INS]

33,471

4.7%

0.043%

C

T

33,348

4.7%

0.043%

G

A

33,163

4.7%

0.043%

N

. [1 bp DEL]

19,452

2.8%

0.024%

…+

NNN+ [3+ bp INS]

13,435

1.9%

0.017%

T

A

13,215

1.9%

0.017%

A

T

11,925

1.7%

0.015%

T

G

11,617

1.6%

0.015%

A

C

9681

1.4%

0.013%

G

C

9524

1.3%

0.012%

C

A

9469

1.3%

0.012%

C

G

9442

1.3%

0.012%

G

T

4188

0.6%

0.005%

NN

.. [2 bp DEL]

3444

0.5%

0.004%

NNN+

…+ [3+ bp DEL]