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Fig. 2 | BMC Biology

Fig. 2

From: Sox5 is involved in germ-cell regulation and sex determination in medaka following co-option of nested transposable elements

Fig. 2

Analysis of Sox5 binding to the dmrt1bY promoter and regulation of dmrt1bY promoter activity upon modulation of Sox5 expression. a Chromatin immunoprecipitation (ChIP) of Sox5 binding to regions Ī±, Ī², or Ī³ of the dmrt1bY proximal promoter. Transient transfection of a flagged and tagged version of Sox5 into either medaka spermatogonial or fibroblast cell lines and subsequent immunoprecipitation (FLAG antibody) followed by the quantitative real-time polymerase chain reaction. Results are presented as enrichment compared to the input and correspond to three independent immunoprecipitations for each region (Ī±, Ī², or Ī³). Statistical significance was assessed with the Wilcoxonā€“Mannā€“Whitney test (Nā€‰=ā€‰3). b1ā€“b4 Analysis of dmrt1bY proximal promoter activity after Sox5 transient transfection into the medaka spermatogonial cell line (Sg3). Deletions of the 5ā€² dmrt1bY promoter were generated: b1 Ī± region, b2 Ī± and Ī² regions, b3, b4 Ī±, Ī², and Ī³ regions. Transcriptional activity was quantified in the absence (control, -Sox5) or presence (+Sox5) of Sox5. Statistical significance was assessed with the Wilcoxonā€“Mannā€“Whitney test (Nā€‰=ā€‰4). c Detailed analysis of the transcriptional activity of the alpha (Ī±), alpha-mutant (Ī±-MUT), and beta (Ī²) fragments. Statistical significance was assessed with the Wilcoxonā€“Mannā€“Whitney test (Nā€‰=ā€‰4). * p valueā€‰ā‰¤ā€‰0.05, ** p valueā€‰ā‰¤ā€‰0.01. ns non-significant, OLF Oryzias latipes fibroblast, Sg3 Oryzias latipes spermatogonial cell

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