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Table 2 Resources for gene regulation in E. coli K-12

From: A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0

Source Type of knowledge URL Updated Reference
RegulonDB Transcriptional regulation, operons, regulons, gensor units Yes [3]
EcoCyc Regulation, transport, metabolism Yes [4]
COLOMBOS Expression compendia of bacterial organisms Yes [1]
STRING Protein-protein interaction network Yes [20]
GEO Genomics HT data repository Yes [21]
ArrayExpress Repository of HT functional genomics experimental results Yes [22]
PortEco Next-generation data for Escherichia coli No [5]
GenExpDB Expression compendia No
EcoGene E. coli K-12 genome and proteome information No [23]
GenProtEC Functions encoded by the Escherichia coli K-12 genome No [24]
EchoBASE Information from postgenomic experiments No [25]
Bacteriome Integrates physical (protein-protein) and functional interactions [26]
EcoProDB Integrates protein information [27]
M3D Resource for microbial gene expression data No [2]