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Table 2 Resources for gene regulation in E. coli K-12

From: A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0

Source Type of knowledge URL Updated Reference
RegulonDB Transcriptional regulation, operons, regulons, gensor units http://regulondb.ccg.unam.mx Yes [3]
EcoCyc Regulation, transport, metabolism https://ecocyc.org Yes [4]
COLOMBOS Expression compendia of bacterial organisms http://colombos.net Yes [1]
STRING Protein-protein interaction network http://string-db.org Yes [20]
GEO Genomics HT data repository https://www.ncbi.nlm.nih.gov/geo/ Yes [21]
ArrayExpress Repository of HT functional genomics experimental results https://www.ebi.ac.uk/arrayexpress/ Yes [22]
PortEco Next-generation data for Escherichia coli http://porteco.org No [5]
GenExpDB Expression compendia https://genexpdb.okstate.edu No
EcoGene E. coli K-12 genome and proteome information http://ecogene.org No [23]
GenProtEC Functions encoded by the Escherichia coli K-12 genome http://genprotec.mbl.edu No [24]
EchoBASE Information from postgenomic experiments https://www.york.ac.uk/res/thomas/ No [25]
Bacteriome Integrates physical (protein-protein) and functional interactions http://www.compsysbio.org/bacteriome/ [26]
EcoProDB Integrates protein information http://eecoli.kaist.ac.kr/main.html [27]
M3D Resource for microbial gene expression data http://m3d.mssm.edu No [2]