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Table 1 Summary of hypothesis testing results for the six gene families tested

From: Strigolactone synthesis is ancestral in land plants, but canonical strigolactone signalling is a flowering plant innovation

Dataset Tree logL p-WKH p-WSH p-AU
D27 Phylobayes_tree_AA − 29,047.235 0.0037 0.0056 0.0024
D27 Raxml_tree_AA − 29,033.177 0.0181 0.0351 0.017
D27 IQ_tree_Nucl − 28,989.821 0.9819 0.9901 0.9872
LBO Phylobayes_tree_AA − 14,392.989 0.0619 0.104 0.0339
LBO Raxml_tree_AA − 14,384.488 0.938 0.997 0.971
LBO IQ_tree_Nucl − 14,454.098 0.0008 0.0009 0.000624
MAX1 Phylobayes_tree_AA − 11,620.825 0.0033 0.0062 0.0007
MAX1 Raxml_tree_AA − 11,556.029 0.8381 0.9544 0.848
MAX1 IQ_tree_Nucl − 11,570.886 0.1619 0.2706 0.1579
CCD7 Phylobayes_tree_AA − 15,752.52 0.1431 0.2475 0.16
CCD7 Raxml_tree_AA − 15,742.717 0.8569 0.9674 0.9133
CCD7 IQ_tree_Nucl − 15,785.588 0.0353 0.047 0.0359
CCD8 Phylobayes_tree_AA − 11,524.537 0.0427 0.0642 0.0205
CCD8 Raxml_tree_AA − 11,514.983 0.957 0.998 0.981
CCD8 IQ_tree_Nucl − 11,621.601 0.0013 0.0015 0.0000293
SMXL Phylobayes_tree_AA − 62,476.375 0.0058 0.0106 0.0077
SMXL Raxml_tree_AA − 62,393.986 0.9942 0.9992 0.9923
SMXL RAxML_tree_Nucl − 62,710.892 0 0 0
  1. Loglikelihood (logL) per topology, as well as p value for weighted KH test (p-WKH); p value for weighted SH test (p-WSH) and p value for the Approximately Unbiased test (p-AU) as calculated in IQ-tree. Highlighted in grey are the non-rejected hypotheses. See the ‘Materials and methods’ section for further details
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